Query= MSMg01no387_p16.b1 MSMg01no387_p16.b1 CHROMAT_FILE:
MSMg01no387_p16.b1 PHD_FILE: MSMg01no387_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:12 2005
(468 letters)
>mm_chr5_51739536_51740409
Length = 874
Score = 839 bits (434), Expect = 0.0
Identities = 451/460 (98%), Gaps = 6/460 (1%)
Strand = Plus / Minus
Query: 15 agtgaagtgcctggttggggctttgaaattggaaaagtttatgagcatcatgggaatcac 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 agtgaagtgcctggttggggctttgaaattggaaaagtttatgagcatcatgggaatcac 815
Query: 75 aattaatgtatgtatcattacagaatttccatgatgagctgggagtcgcataagacattt 134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aattaatgtatgtatcattacagaatttccatgatgagctgggagtcgcataagacattc 755
Query: 135 tagatacatcggctaatgtaatcatgactatttaagacaagcattatcattatttctatt 194
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 754 tagatacattggctaatgtaatcatgactatttaagacaggcattatcattatttctatt 695
Query: 195 ttacagatggtgatactgagtcttctaatatttcccaagggtccatggcagaaaaccacc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttacagatggtgatactgagtcttctaatatttcccaagggtccatggcagaaaaccacc 635
Query: 255 aagaaggcactcagaacatttgacattttttactaaactaaaccagaggtttgctttgcg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aagaaggcactcagaacatttgacattttttactaaactaaaccagaggtttgctttgcg 575
Query: 315 catgtttatgctatttt------ttttaaatctctgcttcttttctacctgacataaata 368
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 574 catgtttatgctattttatttttttttaaatctctgcttcttttctacctgacataaata 515
Query: 369 gaacacttgaaagtcaccactactgtcaatattagagacgtgtcaaatcctgtcacttag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaacacttgaaagtcaccactactgtcaatattagagacgtgtcaaatcctgtcacttag 455
Query: 429 ccagaaagctgctttggagtaactgtgtaatattatacaa 468
||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ccagaaagctgctttggagtaactgtgtaatattatacaa 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 874
Length adjustment: 10
Effective length of query: 458
Effective length of database: 864
Effective search space: 395712
Effective search space used: 395712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no387_p16.g1 MSMg01no387_p16.g1 CHROMAT_FILE:
MSMg01no387_p16.g1 PHD_FILE: MSMg01no387_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:12 2005
(513 letters)
>mm_chr5_51554399_51555311
Length = 913
Score = 911 bits (471), Expect = 0.0
Identities = 503/514 (97%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 1 cttttctcacacaaagaggaggtcctgagaacaatgtaagaagacagcta-acacaaccc 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 200 cttttctcacacaaagaggaggtcctgagaacaatgtaagaagacagctatacacaaccc 259
Query: 60 aaggaagatctgctacccagacagacaccttgatcttaagtcagaatctccggacctgtg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggaagatctgctacccagacagacaccttgatcttaagtcagaatctccggacctgtg 319
Query: 120 agaaatgaatagctcttcagactatggtgttttataatggagacccaggcagaagaacac 179
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agacatgagtagctcttcagactatggtgttttataatggagacccaggcagaagaacac 379
Query: 180 atcaaatcctggggtctgttgccatctcaggttattgtcttgtggctttttctaaaattg 239
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 atcaaatcctggggtctgctgccatctcaggttgttgtcttgtggctttttctaaaattg 439
Query: 240 gcaggataataaaaactacaaacgaaatacatttccttctaatgttttctttgtttgtat 299
||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 440 gcatgataataaaaactacaaactaaatacatttccttctaaagttttctttgtttgtat 499
Query: 300 cattggcttccagcctatgatccctgatcatcagtacaaagagtggaaaatggatttagt 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cattgtcttccagcctatgatccctgatcatcagtacaaagagtggaaaatggatttagt 559
Query: 360 cactcaaagcatagaatgcagattccggtcctcctccaaagttctagcatctgacagctc 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 cactcaaagcatagaatgcagattccggtcctcctccaaaattctagcatctgacagctc 619
Query: 420 anacttgatgacctggttcgataacagggtctttatagaggcaataatgttcaaatgagg 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaacttgatgacctggttcgataacagggtctttatagaggcaataatgttcaaatgagg 679
Query: 480 ccatttgtgtgtgccttaataaaatatgactgta 513
||||||||||||||||||||||||||||||||||
Sbjct: 680 ccatttgtgtgtgccttaataaaatatgactgta 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
