BAC Information

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BAC

Clone NameMSMg01-388B03
Chromosome5 (Build37)
Map Location 22,978,173 - 22,978,496
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254
Downstream geneSrpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388B03.T7 (MSMg01no388_b03.b1)MSMg01-388B03.TJ (MSMg01no388_b03.g1)
ACCAG490653AG490654
length749753
length of high quality
(start - end)
328 (43 - 370)621 (79 - 699)
definitionCHROMAT_FILE: MSMg01no388_b03.b1 PHD_FILE: MSMg01no388_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:19 2005CHROMAT_FILE: MSMg01no388_b03.g1 PHD_FILE: MSMg01no388_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGGCCAGCCTGATCTACAGAACAGAGTTCCAGAACAGCTAGAACTAC
AAAGAAAAATTGTCTCCAAAAAGGCAAAACAAAAACAAAAACAACAAAAA
CCCAACACCCACTACCCTGGCAGACAGAGAGAGAAGGGGGTGGGGGAAGA
TGGGGAGAAGGGAGAGAGAGAGAGAGAAAGAATATGACTATCACATGGTA
TAAGACAAGCCTGCATTGTGTACTACATAAGCTATCAGACCAGCCTACGC
AAGGGAGCTCAGGCCAGGCCAACACGGCCTACATAGAAGACCCTATCTAA
AAAAGCAACAACCAATTCAAAAAAACCAAAAACTAAACATAAAAATTGCA
GCATATACAAAATTCACAACATAGTATCCTAAAAATTAAAACAATACTAT
CTTACATGGTAAATTAATGGATCATTATTCCAACCAACATACTTTAAAGA
TTATCTACTACATGTGAGTACAAACAGTGACTTTTGCTTTTTATTTACTT
TGTTCCACCTATTATGTTTCCTTAAATATGGACTTGCATATTCTATAATC
CAAGATCCCATCCCTCTCTGATCATCATGGCCGATCAACCCGCCCCCAAT
GCCTTTTCCCTTCCCTCGCCGTTTTTGCTTCTCCAGACTACATCTCTTTC
ATGCCTAACCTTCCCCTTCCCTCCTCTCTCTCCTCCCCCTTTCTCTCTG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGTATTCTTCATATTCAT
TCAAACTACTATCAGAGGAGTTTCAGGCTGGATTAGGGGCTCGAAGAAGC
TCTATCCATTCTTTCTTGGGCATACAACAGAATGTCTGGGAAAGTCATGT
CTGTCGGCAACGACTACCTAGGAAATACCTCTCCAGTATGATAATGCTGG
GGAATGTCCTGGGAACCATTATGGAAAAGAAGCCTTGTTCTCAGTCATTT
TTAACAGAAGCATCCACTATGGATATCTGCCAGTCTATTCATAATTTATT
TGGGGTTCCAGCTGAACTAATGGAATTTTCTCAAAGCCTGCTAGAGAGGG
CTCCAAGGACTGTTTCTCAGACCTCAGTGGTTAAAAACTATATTCAGAGA
CATATTTTATGTCACAGTAATGAGAAAAGAATGCCTTTAAAGATGTGGAC
ACGCGGCTCCACATCTTCCATAATACAGCAATACTCTGGTAGTAGATTGG
GAGTCAAGAAAACAAGCTCAAACCTCAGCAATATACTCCAGGATGTCACT
GAGCATGTGTCTGTCTCATGTACTGGGGCCAGGTTTCCTGCCTTGAGGAA
ATCAGAGTCTAACTCTGAGATACTTTATACTAGGGAAGGTTCTCTTTCCA
GGGAGCACAGTAAAATTTCACCATGTGAAAATTTTACTAGCGCTTCTGCA
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_b03.b1 MSMg01no388_b03.b1 CHROMAT_FILE:
MSMg01no388_b03.b1 PHD_FILE: MSMg01no388_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:19 2005
         (328 letters)



>mm_chr5_22977784_22978511
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagggccagcctgatctacagaacagagttccagaacagctagaactacaaagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattcagggccagcctgatctacagaacagagttccagaacagctagaactacaaagaa 654

                                                                       
Query: 65  aaattgtctccaaaaaggcaaaacaaaaacaaaaacaacaaaaacccaacacccactacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaattgtctccaaaaaggcaaaacaaaaacaaaaacaacaaaaacccaacacccactacc 594

                                                                       
Query: 125 ctggcagacagagagagaagggggtgggggaagatggggagaagggagagagagagagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctggcagacagagagagaagggggtgggggaagatggggagaagggagagagagagagag 534

                                                                       
Query: 185 aaagaatatgactatcacatggtataagacaagcctgcattgtgtactacataagctatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaagaatatgactatcacatggtataagacaagcctgcattgtgtactacataagctatc 474

                                                                       
Query: 245 agaccagcctacgcaagggagctcaggccaggccaacacggcctacatagaagaccctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agaccagcctacgcaagggagctcaggccaggccaacacggcctacatagaagaccctat 414

                                   
Query: 305 ctaaaaaagcaacaaccaattcaa 328
           |||||||||||||||| |||||||
Sbjct: 413 ctaaaaaagcaacaacaaattcaa 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)