Query= MSMg01no388_f12.b1 MSMg01no388_f12.b1 CHROMAT_FILE:
MSMg01no388_f12.b1 PHD_FILE: MSMg01no388_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:39 2005
(544 letters)
>mm_chr5_72111201_72112143
Length = 943
Score = 1021 bits (528), Expect = 0.0
Identities = 537/540 (99%), Gaps = 1/540 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggagcaatattttaaactcatcacaggcaccaatcttgttgacttttgttgtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggagcaatattttaaactcatcacaggcaccaatcttgttgacttttgttgtc 264
Query: 65 catggtgattcttctgttttcatctgttgctttccacctttctacttgatccttcacctt 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catggtgattctt-tgttttcatctgttgctttccacctttctacttgatccttcacctt 323
Query: 125 cctcttttactttcacaggatatatttttcaggcagtgcatacagtcaattgtatattag 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 cctcttttactttcacaggatatatttttcaggcagtgcatatagtcaattgtatattag 383
Query: 185 cattcagaacatccagtgaacccctggattatttaagttcatttatttgtcctggaggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cattcagaacatccagtgaacccctggattatttaagttcatttatttgtcctggaggaa 443
Query: 245 acaaaagatgcattgtactacttttgatcctgagaattaagccctgtcctatcaagtata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaaaagatgcattgtactacttttgatcctgagaattaagccctgtcctatcaagtata 503
Query: 305 ttccatatatccaaggcttagatttgaatgaatgggtagtttataaataactgatatgat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttccatatatccaaggcttagatttgaatgaatgggtagtttataaataactgatatgat 563
Query: 365 gacatgaagattcataatggaaaggtaaattgagggggtaaatcaaagtgtcaaagaatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gacatgaagattcataatggaaaggtaaattgagggggtaaatcaaagtgtcaaagaatc 623
Query: 425 ctgtatacggactaaagttgagatgttcagagatgacaatagaagataaaactatactaa 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 ctgtatacggactaaagttgagatgttcagagatgacagtagaagataaaactatactaa 683
Query: 485 ggttggtatatgccattaattctgatggaaatcagagaaaaaatgtgaaaagtggagagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggttggtatatgccattaattctgatggaaatcagagaaaaaatgtgaaaagtggagagg 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_f12.g1 MSMg01no388_f12.g1 CHROMAT_FILE:
MSMg01no388_f12.g1 PHD_FILE: MSMg01no388_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:39 2005
(552 letters)
>mm_chr5_72284397_72285348
Length = 952
Score = 658 bits (340), Expect = 0.0
Identities = 349/352 (99%), Gaps = 1/352 (0%)
Strand = Plus / Minus
Query: 201 ttctatctgggaagccttgtctggccccaatgggagaggaagcacctagtctcacagaga 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ttctatctgggaagccttgtctggccccaatgggagaggaagcacctagtctcacagaga 893
Query: 261 cttgaagtgtcagagtcgggggatacccaggaggagggctgcttacttagagagagggga 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 cttgaagtgtcagagtcgggggatacccaggaggagggctgcttacttagagagagggga 833
Query: 321 aggaaagatgagggaaggattgtgggagggattcaccgggagggggcagtgatcagaatg 380
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 832 aggaaagatgagggaaggattgtgggagggattcactgggagggggcagtgatcagaatg 773
Query: 381 taaagtgaataagtaaaaaaaaaaatcaattaaactaaaaaccactttccttctaaatat 440
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 772 taaagttaataagtaaaaaaaaaa-tcaattaaactaaaaaccactttccttctaaatat 714
Query: 441 caaaacctatatcactttataaacatgggagttatcagatggccttatgaaaatatgttt 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 caaaacctatatcactttataaacatgggagttatcagatggccttatgaaaatatgttt 654
Query: 501 tattatttgagtatatagaggtcacactttgttttctggaatccatcctaaa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tattatttgagtatatagaggtcacactttgttttctggaatccatcctaaa 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
