Query= MSMg01no388_h21.b1 MSMg01no388_h21.b1 CHROMAT_FILE:
MSMg01no388_h21.b1 PHD_FILE: MSMg01no388_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:50 2005
(495 letters)
>mm_chr5_144180811_144181705
Length = 895
Score = 886 bits (458), Expect = 0.0
Identities = 485/494 (98%)
Strand = Plus / Plus
Query: 2 ggaattcaaggtcattcccaggtacatttccactttgaggctgacttgagtgccccctgc 61
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcaaggtcattcctaggtacatttccactttgaggctgacttgagtgccccctgc 261
Query: 62 atgagcccctttctccaaacaaaatgaacaaaaaactccaaggttcagtcagggctaaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgagcccctttctccaaacaaaatgaacaaaaaactccaaggttcagtcagggctaaga 321
Query: 122 tttctgacagccatcaaagctcttaccactcagttgcagtaagtgcctcattaaacagtt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttctgacagccatcaaagctcttaccactcagttgcagtaagtgcctcattaaacagtt 381
Query: 182 tgaggtagctgcgctcacagatctggggggacactgcatgtgaatctgtagcctgcccct 241
||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 382 tgaggtagctgtgctcacagatctgggggaacactgcatgtgagtctgtagcctgcccct 441
Query: 242 ctccttcatgtcagtaaacagaaccaacacagagctttccaattgtacctttcctttcgc 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 ctccttcatgtcagtaaacagaaccaacacagagctttccaattgtacctttactttcgc 501
Query: 302 agactctgtttgctggtattcagggtttctggttgctgctatggaaatgcagtggtgagc 361
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 502 agactctgtttgctggtattcagggtttctggttgctgctgtggaaatgcagtggtgagc 561
Query: 362 tcagcacccttatatatgtgcatttgcacatttgtgtaaatataggacatacagattact 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcagcacccttatatatgtgcatttgcacatttgtgtaaatataggacatacagattact 621
Query: 422 agctgaaaactatttgtggtccttgttcagagaagaaagatgcacatctgacggatgcag 481
|||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct: 622 agctgaaaactatttgtggtccctgttcagaaaagaaagatgcacatctgatggatgcag 681
Query: 482 gcagactcctgcag 495
||||||||||||||
Sbjct: 682 gcagactcctgcag 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_h21.g1 MSMg01no388_h21.g1 CHROMAT_FILE:
MSMg01no388_h21.g1 PHD_FILE: MSMg01no388_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:50 2005
(448 letters)
>mm_chr5_144371634_144372481
Length = 848
Score = 592 bits (306), Expect = e-173
Identities = 333/344 (96%), Gaps = 4/344 (1%)
Strand = Plus / Minus
Query: 105 tctgtcatgtctttttcttttcttttttgtttttttttttgttttgtttttgtttttgtt 164
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 848 tctgtcatgtctttttcttttcttttttg----tttttttgtgttgtttttgtttttgtt 793
Query: 165 ttttgggataaggcttcttctctctgtagctctgactgtcctggaacaaattctgtagac 224
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 792 ttttgggatagggcttcttctctctgtagctctgactgtcctggaacaaattctgtaaac 733
Query: 225 taaactggcctagaactcacatatatctgcctgcttctgccctccaagcactggggttaa 284
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 732 taaactggcctagaactcacagagatctgcctgcttctgccctccaagcactggggttaa 673
Query: 285 aggcatgcactaccacacctggctagtgtatattcaggttctgtgtctatttccaccaca 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 672 aggcatgcactaccacacctggctagtgtatattcaggttctgtgtctatttccaccaaa 613
Query: 345 ttgatttgtctttctcctggaaggtagaccgagacgaaggatgtagacgacacttataga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttgatttgtctttctcctggaaggtagaccgagacgaaggatgtagacgacacttataga 553
Query: 405 gcacaagaaagaaacacctaagtctcccgaagctcctgagactt 448
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcacaggaaagaaacacctaagtctcccgaagctcctgagactt 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
