XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAACCC
TTGACTTTCTTTCCAAAGCTTTCCCTTTCCGTGCTTGGGAACATCACTAC
ATTTAGGAAACCTACACAATTGTAATGCAACCAACCTGCTGTCATGAGAA
TGCGCATTAATTTATTTTATTGATTTTTTATTGGATATTTTATTTCTTTC
CATTCCAAATGTTATCCCCTTTCTCGATCCCCCCTGTGCCCAGAAACCCC
CATCTGCACGCCTCCTGCTTCTGTGAGGGTGTTCCTCCATCCACCCACCT
ACCCACTCCTACCTCCCCACCCTCGCATTCCCCTACACTGGGGCATTGAG
CCTTCACCTGGACCAAGGTCTCTTCCTCCATTGATGCCTGACAAGGCCAT
CTTCTGCTACGTATAAGGCTGAAGCCATGGGCCCCTCTTGTGCACTCCTT
GGTTGGTGGTTTAGACATTGAGACCTCTGGTTAGTTGATATTGTAGCCTT
ATATACGGAGAGAAGAAAAGGAAGACATATAATAGGGCAAAAAATCATGT
GATGATAGGAGCACTTACTCCTTATGCATTCTTGTAAGACATGTATACTT
GCTACATCCGGGATCCCACATCCCGGGGGGCACCTCCCGGTGGCCAATTT
CCTAAATTTTTCCACCTTGCCCCGCCTAACCTGGTAACCCTGGAGCTACA
TAAACTCCCCCCCTCCCCCCCCCTCCGTCTTTCCCCCCTCACCCCCCCCA
ATTATAATCTCTCCCCCTCCCCCCTTG

NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGATATTTATAAAGGT
TTTCAGAAAAGAAAGGAAAGGAGCAACCAATAATTCACCCAGAAGATTCT
GGATGAAATTTGAGAGAGTATAAACGGGGAGTTAAATGAAATAAGCAAAT
CAATGCAAGGAATAAATGAGGAATTCAGTACAGACAAATATTGCCAAAAT
AAAATTGAATGTTTGGAAATAAGCAGCTTATTTAGGAAAAAATATCCGTT
AGAAGCATCAGCATCAGAATTGATCAACAGAGAAACAAGAAGAGGGCTAA
TGACAATGAGCAAGAAAGGATGATCACAGTGCGTGAAAGAAATACTACTC
ACAAACAAATTCACAGATCTTGGATGAAGAGGAAACAGATATGCCAACTA
AGGATGAATAGAATATATTTATTAAATCATAGCAGAAAATTTCTTAAATG
CACCTAATTTCAATAGAATTTTTCAAACAGCATAGACCACTAATGTACCT
TTCTGTGTGACTCTATAGTANACCACAGAAAAATGAATATAGAAAGATCT
AANAAGAAGCACTGTGGGACCTTTCAAGGCAGCCTGTTTTCTGGGTGAGC
TAGGTTTAAACCCTGGAGACCCAGCTGATAATTCTGCAAGAGATGGAAGG
GAATTTGCCATGCCCCCGACACCAGACTGCTTGACGGAGCCCCAGCTCTT
ACTTTTG

Query= MSMg01no388_k06.b1 MSMg01no388_k06.b1 CHROMAT_FILE:
MSMg01no388_k06.b1 PHD_FILE: MSMg01no388_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:01 2005
         (441 letters)



>mm_chr5_84070519_84071359
          Length = 841

 Score =  594 bits (307), Expect = e-174
 Identities = 331/339 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaaaacccttgactttctttccaaagctttccctttccgtgcttgggaacatcac 63
           ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct: 339 gaattcaaaacccttgaatttctttccaaagctttcccttgcagtgcttgggaacatcac 280

                                                                       
Query: 64  tacatttaggaaacctacacaattgtaatgcaaccaacctgctgtcatgagaatgcgcat 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 279 tacatttagaaaacctacacaattgtaatgcaaccaacctgctgtcatgagaatgtgcat 220

                                                                       
Query: 124 taatttattttattgattttttattggatattttatttctttccattccaaatgttatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 taatttattttattgattttttattggatattttatttctttccattccaaatgttatcc 160

                                                                       
Query: 184 cctttctcgatcccccctgtgcccagaaacccccatctgcacgcctcctgcttctgtgag 243
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 159 cctttctcaatcccccctgtgcccagaaacccccatctgcacacctcctgcttctgtgag 100

                                                                       
Query: 244 ggtgttcctccatccacccacctacccactcctacctccccaccctcgcattcccctaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ggtgttcctccatccacccacctacccactcctacctccccaccctcgcattcccctaca 40

                                                  
Query: 304 ctggggcattgagccttcacctggaccaaggtctcttcc 342
           |||||| ||||||||||||||||||||||||||||||||
Sbjct: 39  ctggggaattgagccttcacctggaccaaggtctcttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_k06.g1 MSMg01no388_k06.g1 CHROMAT_FILE:
MSMg01no388_k06.g1 PHD_FILE: MSMg01no388_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:01 2005
         (518 letters)



>mm_chr5_83904692_83905609
          Length = 918

 Score =  919 bits (475), Expect = 0.0
 Identities = 507/518 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagatatttataaaggttttcagaaaagaaaggaaaggagcaaccaataattcaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagatatttataaaggttttcagaaaagaaaggaaaggagcaaccaataattcaccca 260

                                                                       
Query: 61  gaagattctggatgaaatttgagagagtataaacggggagttaaatgaaataagcaaatc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagattgtggatgaaatttgagagagtataaacggggagttaaatgaaataagcaaatc 320

                                                                       
Query: 121 aatgcaaggaataaatgaggaattcagtacagacaaatattgccaaaataaaattgaatg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgcaaggaatgaatgaggaattcagtacagacaaatattgccaaaataaaattgaatg 380

                                                                       
Query: 181 tttggaaataagcagcttatttaggaaaaaatatccgttagaagcatcagcatcagaatt 240
           ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tttggaaataagcagcttagtaaggaaaaaatatccgttagaagcatcagcagcagaatt 440

                                                                       
Query: 241 gatcaacagagaaacaagaagagggctaatgacaatgagcaagaaaggatgatcacagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcaacagagaaacaagaagagggctaatgacaatgagcaagaaaggatgatcacagtg 500

                                                                       
Query: 301 cgtgaaagaaatactactcacaaacaaattcacagatcttggatgaagaggaaacagata 360
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 501 cgtgaaagaaatactactcacaaacaaattcacagatcctgggtgaagaggaaacagata 560

                                                                       
Query: 361 tgccaactaaggatgaatagaatatatttattaaatcatagcagaaaatttcttaaatgc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tgccaactaaggatgaatagaatatatttattaaatcatagcagaaaatttcctaaatgc 620

                                                                       
Query: 421 acctaatttcaatagaatttttcaaacagcatagaccactaatgtacctttctgtgtgac 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctaatttcaatagaatttttcgaacagcatagaccactaatgtacctttctgtgtgac 680

                                                 
Query: 481 tctatagtanaccacagaaaaatgaatatagaaagatc 518
           ||||||||| || |||||||||||||||||||||||||
Sbjct: 681 tctatagtaaactacagaaaaatgaatatagaaagatc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)