BAC Information

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BAC

Clone NameMSMg01-388N04
Chromosome5 (Build37)
Map Location 145,494,686 - 145,495,215
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967
Downstream geneTmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388N04.T7 (MSMg01no388_n04.b1)MSMg01-388N04.TJ (MSMg01no388_n04.g1)
ACCAG491226AG491227
length776757
length of high quality
(start - end)
379 (36 - 414)530 (66 - 595)
definitionCHROMAT_FILE: MSMg01no388_n04.b1 PHD_FILE: MSMg01no388_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:14 2005CHROMAT_FILE: MSMg01no388_n04.g1 PHD_FILE: MSMg01no388_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTT
GATTTTCTGTTTCTTTTTTTTTTTTTTTTTTTTTTTGGGTGGTGTTGGTT
TTATTTGTTTTTCAAGACAGGGTTGCTTCTGTGCCCTGAAATTCTATCTG
TAGACCAGGCTGCCTTGAACTTACAGAGATCTGCCTGCATCTGCCCCCCA
CCCTCACCCCTGGAATGCTGGGATTAAAGTGCACCATCATACCCAGCTCT
GGTTTTCTGTTTCGTGAGGTATAAGCTTAGACTTGCGATTTATGACTTTT
CTTCTTTTCCAGCAAAGACATTTCATCTTTTTCTTTCTCTTATAAGGGCT
GGGCAACAAGATAGCTCAGCAGGTAAAAGTGTGTGCTGTGTGTGCTGAGT
TCAGGCCCTTGTACAAAGCAGATGTGGTGGTGCACATCTGTAACTCCAGC
ATTTCTGTGCTGAGACAGAACGCTCACGAAGGAGAGCTGCCCTACCGCTC
ATGGGCCAGCTAATCTGAACCGTGCAGGTTGTTCCAGTATTCACACCTTC
CACGTGGAAGGACAATTGCCCCATTCCTTTATTGTCCACCTAATCTGGAA
ACTGTTCGTCGCTCACTAATTCTCTCTTCTTTCGTTGTAATGATACCTTT
TTTTATAACTCTTTGGCCCATCTTATTCTGAATATTTCTCTTTTCTCTCC
CCAAATTCCCTTTTTATATCATCATACCTTAAACTTCCCCCCTTCTATCC
CCTCCTTCTTTTTTCTGTAACTCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCACGTCTTTCTCTTTTGCTTTCTAGGGATGAAAAA
GCCATTCACCCTGCCATGCATTTCCCACCATGGGTCTTTGGCATCCCACC
AGAGACCCAAAGCAAGACTGCACACCAGTCTTGGTCTGAAATCTCCAAAA
GTCAGTCAAAGAAACCTTTACTCAATGTTGGATCCTGTGAATTTAGATTA
GTAACGAAGGTTCAGGCAGTTGTTGGAGATTTGAAGGGAATGAACTGATT
TGGGAAGCTGTGTGGCTGCAGACAGACAGCCCAGGCTCTCTGTGAAAGAA
GTTCATCCCCTGCCATACTGGCCTTCTGTGACTTCTTGCAAAGGCTCATA
GCACCCCCTGATGTCCACTACTGGAATTGCACTGGAATTTCATGGAGGGA
TTCAGGGGGTGAGATGTTTGGATATGTAGAAAGTTCCAGCTCAGAGGATA
GGTTTGGGATCGACTGGACTCTAGTTCTGGGCACAGAAGATGTGAGGAGT
CAAAGAGCAAGCCAAACATAGATGGGCTCATCGTGGGCTCAGGGCATAGT
CTGAGCTGGACACAAATACTTGGGGTCATGTCTATGGAAAGGGTGGGTTT
TATATCAACTTGACAAGTTAGAATCATCTGAGAAGAGGGAGCCACTTTGG
AAAAAAAAGCCTCTATAAGATCTGGCTGGAAACATGTCTATAAAGGATTT
TGTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_n04.g1 MSMg01no388_n04.g1 CHROMAT_FILE:
MSMg01no388_n04.g1 PHD_FILE: MSMg01no388_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:14 2005
         (530 letters)



>mm_chr5_145494486_145495415
          Length = 930

 Score = 1017 bits (526), Expect = 0.0
 Identities = 529/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgtctttctcttttgctttctagggatgaaaaagccattcaccctgccatgcatttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgtctttctcttttgctttctagggatgaaaaagccattcaccctgccatgcatttcc 260

                                                                       
Query: 61  caccatgggtctttggcatcccaccagagacccaaagcaagactgcacaccagtcttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccatgggtctttggcatcccaccagagacccaaagcaagactgcacaccagtcttggt 320

                                                                       
Query: 121 ctgaaatctccaaaagtcagtcaaagaaacctttactcaatgttggatcctgtgaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaatctccaaaagtcagtcaaagaaacctttactcaatgttggatcctgtgaattta 380

                                                                       
Query: 181 gattagtaacgaaggttcaggcagttgttggagatttgaagggaatgaactgatttggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattagtaacgaaggttcaggcagttgttggagatttgaagggaatgaactgatttggga 440

                                                                       
Query: 241 agctgtgtggctgcagacagacagcccaggctctctgtgaaagaagttcatcccctgcca 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgcgtggctgcagacagacagcccaggctctctgtgaaagaagttcatcccctgcca 500

                                                                       
Query: 301 tactggccttctgtgacttcttgcaaaggctcatagcaccccctgatgtccactactgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactggccttctgtgacttcttgcaaaggctcatagcaccccctgatgtccactactgga 560

                                                                       
Query: 361 attgcactggaatttcatggagggattcagggggtgagatgtttggatatgtagaaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgcactggaatttcatggagggattcagggggtgagatgtttggatatgtagaaagtt 620

                                                                       
Query: 421 ccagctcagaggataggtttgggatcgactggactctagttctgggcacagaagatgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagctcagaggataggtttgggatcgactggactctagttctgggcacagaagatgtga 680

                                                             
Query: 481 ggagtcaaagagcaagccaaacatagatgggctcatcgtgggctcagggc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagtcaaagagcaagccaaacatagatgggctcatcgtgggctcagggc 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)