Query= MSMg01no389_c21.b1 MSMg01no389_c21.b1 CHROMAT_FILE:
MSMg01no389_c21.b1 PHD_FILE: MSMg01no389_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:41 2005
(418 letters)
>mm_chr5_30153709_30154526
Length = 818
Score = 712 bits (368), Expect = 0.0
Identities = 376/380 (98%), Gaps = 3/380 (0%)
Strand = Plus / Minus
Query: 1 cttaatggctgagaagcacctaaaaaaatgttcaacagacatccggcttcccatccagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttaatggctgagaagcacctaaaaaaatgttcaacagacatccggcttcccatccagag 318
Query: 61 tagacccaaggcagaggcagctacacctgagtcaccagcttccctgcccgggtctccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagacccaaggcagaggcagctacacctgagtcaccagcttccctgcccgggtctccctt 258
Query: 121 gtctggctaccactctccagatcagtgtttgtcagtcttatggtgtgaactcaaagccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 257 gtctggctaccactctccagatcagtgtttgtcagtcttatggtgtgaactcaaagctac 198
Query: 181 ctgcagggctggtacagctgggcagctgggcctcaccctagagtttctgtccttatatct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ctgcag---tggtacagctgggcagctgggcctcaccctagagtttctgtccttatatct 141
Query: 241 ggggctggagcctgagaaggctctttaaatccattcttataaagctggtggtgagacacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ggggctggagcctgagaaggctctttaaatccattcttataaagctggtggtgagacacc 81
Query: 301 acagagcctcagcttggagcttgcttcgtgggagtgtagcatgagtgttgcagaaaagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 acagagcctcagcttggagcttgcttcgtgggagtgtagcatgagtgttgcagaaaagcc 21
Query: 361 ccttgagcagtaaataataa 380
||||||||||||||||||||
Sbjct: 20 ccttgagcagtaaataataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_c21.g1 MSMg01no389_c21.g1 CHROMAT_FILE:
MSMg01no389_c21.g1 PHD_FILE: MSMg01no389_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:42 2005
(474 letters)
>mm_chr5_29950201_29951068
Length = 868
Score = 669 bits (346), Expect = 0.0
Identities = 428/486 (88%), Gaps = 52/486 (10%)
Strand = Plus / Plus
Query: 1 atgaaagagggggacatttcccttgagtattatagccactggtaaggtgctcgtgatttt 60
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 191 atgaaagagggggaca-ttccc-tgagtattatagcccctggtaaggtgctcgtgatttt 248
Query: 61 gtaacctctcatctgtgctcctgttaacaactataacaaatcttactaga---------a 111
|||||||||||||||||||||||||| ||||| |||||||||||||| || |
Sbjct: 249 gtaacctctcatctgtgctcctgttagcaactgtaacaaatcttactggacacacacaca 308
Query: 112 cacacacacacacacacacacacac---caagacatgaaagcagagaatgaggaaaggaa 168
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 309 cacacacacacacacacacacacactcacaagacatgaaagcagagaatgaggaaaggaa 368
Query: 169 actgggtaggggtaggggcaggaaagattaaggaggagatgaatgtgcttaaaacacact 228
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actgggtaggggt------aggaaagattaaggaggagatgaatgtgcttaaaacacact 422
Query: 229 gtatatatgaacgtatcataaaactcaattttatttatagttactatttatttatttatt 288
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 423 gtatatatgaacgtatcataaaacccaattttatttatagttactatttatttattt--- 479
Query: 289 tatttatttatttatttatttatttattcatttcaaaaacattattaaaaagctacccag 348
|||||||||||||||||||||||||||||||
Sbjct: 480 -----------------------------atttcaaaaacattattaaaaagctacccag 510
Query: 349 gtatgaaaatgtggcttagtagtaagtaaaacatttgccaagcagatgggttctgtaccc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtatgaaaatgtggcttagtagtaagtaaaacatttgccaagcagatgggttctgtaccc 570
Query: 409 agctctgaagaaaaaaagacaaccaacagcccaacttttttttccccattattaaaattt 468
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 571 agctctgaagaaaaaaagacaaccaacagcccaacttttttttccccataattaaaattt 630
Query: 469 tattga 474
||||||
Sbjct: 631 tattga 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 868
Length adjustment: 10
Effective length of query: 464
Effective length of database: 858
Effective search space: 398112
Effective search space used: 398112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
