BAC Information

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BAC

Clone NameMSMg01-389E02
Chromosome5 (Build37)
Map Location 141,821,041 - 141,821,418
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
Downstream geneSdk1, LOC666727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389E02.T7 (MSMg01no389_e02.b1)MSMg01-389E02.TJ (MSMg01no389_e02.g1)
ACCAG491555AG491556
length732748
length of high quality
(start - end)
214 (109 - 322)387 (82 - 468)
definitionCHROMAT_FILE: MSMg01no389_e02.b1 PHD_FILE: MSMg01no389_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:48 2005CHROMAT_FILE: MSMg01no389_e02.g1 PHD_FILE: MSMg01no389_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCAATTCTTCCCCCCAGCCCTGAATTGACTGAACCAGAA
TCTCTATGCATAACATTGACACCCTCAACTGTGAGAGTCACACCACAAGG
ACTGAAATTTCAATGATAGCTGGGGACATGGCTCACCTAGTAAAGTTTTG
TTATGCAAACATGAGGAAATAAGTTTGATACCAGGACCTACATAAAAGCT
AGATATGGCAACACACATCTGTATTCAAGCAGTGGGGAGGCAATAACAGG
GGGATCCTTGAGGCTTGCTGGTCAACCAGCCTGGTTGAAGCTCCAGGTTC
AGAGAGACTCTGTCTCAAAAAACAAGCTGGAGAGCAGTAGAAGAACACAC
CCAGGGCTGATCGATGACTCCATCTATGCCCACACACATACACAAGCACA
CGTGTAATTCAAACTTAAATCATGTTTATGCTCAAAAGCTTCCTGATGAT
AAAAGTGTGCACATATGGATATGAATGACGAATGCAGCGATCTGCCCTAA
AGAGACAAAGCACTGACTGCCCTGCCAAACAACCTGAGTTCAATTCCCAA
CATCCATATCATGACTAGCAATCCTTTGTCACTCCAGTTCCAGGCGATCC
CGCACCCTCTCTTGACATCCAAGGCCCCCCGCCCCTCAATGGCTCCCACA
TATACCTGCCTTGCCCACCAAACTACCCTATG
GGGGACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATTTCACAGGGAAAG
GAGTGTCTGCTATGAGTCGATATGAAAGCCTGGGTAGGAGGAGTCACTAA
AGTGCTTGGTTGCCCAGTTCTCTCTGTGGTGGCTTGCTTCCCTTTGTGGG
CTTCTCTGGGTCTGCTCACTGCATTCACTGTTTCTTTGGGTTGAGGGTGT
GCACTGGACATGAGGAATCTCGGAAGTTGGGTTGGTTTCCAGTGTGGGCC
TCCAGCTCCCAAAAGCATCCTCTACCCATGTCTTCTGGATGTTTAGATTG
GTGTCTTTCCTTCATGCCATTTCTTCACCTTGAAAGTTTGGTGCTGGGTA
TGTTTCTGTGCCTATTTTCAAGGGTCTATCACCTAGTGCATTTCCTCAGC
TGTGTAACATTTTCTTGTCACCTGGTGGCAAACGCAGGAGCTCAACTTCA
GGTGACTGGATGGGTCAGAGCCTTTACTTAACCGTCTTACTGGTGGAGGC
GTCTGCTGTCTGCCCCCTTCAAAACTTGTTTGAAGTAATCTGCTCTGCTT
CTGACTTCCCAACCTTTCCCCCTGTGGCAGTCCTGATTCTCCCTAATCTA
CGCTTTGAGCCCTTTACCCTTCTGGCTCACTAATTAGGACCTAATCTTTC
TACGTCTCCATTATTCTTCCCATCTCCTTAATTACTGGTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_e02.g1 MSMg01no389_e02.g1 CHROMAT_FILE:
MSMg01no389_e02.g1 PHD_FILE: MSMg01no389_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:48 2005
         (387 letters)



>mm_chr5_141820841_141821627
          Length = 787

 Score =  648 bits (335), Expect = 0.0
 Identities = 370/387 (95%), Gaps = 9/387 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaatttcacagggaaaggagtgtctgctatgagtcgatatgaaagcctgggtaggagg 60
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tttaatttcacagggaaacgagtgtctgccatgagtcgatatgaaagcctgggtaggagg 260

                                                                       
Query: 61  agtcactaaagtgcttggttgcccagttctctctgtggtggcttgcttccctttgtgggc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agtcactaaagtgcttggttgcccagttctttctgtggtggcttgcttccctttgtgggc 320

                                                                       
Query: 121 ttctctgggtctgctcactgcattcactgtttctttgggttgagggtgtgcactggacat 180
           ||||||||||||||         |||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttctctgggtctgc---------tcactgtttcattgggttgagggtgtgcactggacat 371

                                                                       
Query: 181 gaggaatctcggaagttgggttggtttccagtgtgggcctccagctcccaaaagcatcct 240
           |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 372 gaggaatctctgaagtcgggttggtttccagtgggggcctccagctcccaaaagcatcct 431

                                                                       
Query: 241 ctacccatgtcttctggatgtttagattggtgtctttccttcatgccatttcttcacctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 ctacccatgtcttctggatgtttagattggtgtctttccttcatgccgtttcttcacctt 491

                                                                       
Query: 301 gaaagtttggtgctgggtatgtttctgtgcctattttcaagggtctatcacctagtgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaaagtttggtgctgggtatgtttctgtgcctattttcaagggtctatcacctagtgcat 551

                                      
Query: 361 ttcctcagctgtgtaacattttcttgt 387
           |||||||||||||||||||||||||||
Sbjct: 552 ttcctcagctgtgtaacattttcttgt 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)