BAC Information

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BAC

Clone NameMSMg01-389E03
Chromosome5 (Build37)
Map Location 13,388,873 - 13,389,228
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389E03.T7 (MSMg01no389_e03.b1)MSMg01-389E03.TJ (MSMg01no389_e03.g1)
ACCAG491557AG491558
length743744
length of high quality
(start - end)
356 (128 - 483)491 (84 - 574)
definitionCHROMAT_FILE: MSMg01no389_e03.b1 PHD_FILE: MSMg01no389_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:48 2005CHROMAT_FILE: MSMg01no389_e03.g1 PHD_FILE: MSMg01no389_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCGTAAATTAGAAAACTGGCTTTACCTCTCTCTAAATGGA
GTCTATCAGAAAGGGGCTCAAATGTCACTAATTATTTTATAGGAATAATC
ATGTTGAAGCTTTACACAAGCGAAAGCTTTAGTATGCTTTTGGACTGGCA
TGTCAGGATGAAAATAAAAACCCTTCTGCTGACGTGGAGCTGATTGAGTT
ACATTTAACAGGATGCAGGGCATGGCGCTTCAGCTATCTTACGGTGGCGG
GCTGCTTGCCACCCCAGAAGCAAGATCATGTTTCCTCTGCCCCATGCAAT
TTCAGAAAGCTTTCATAGATACTACATGATTGGCACTGTGGCCCTCTTCC
CAATCTGATTTATTTGAATGTTACTATCACCGTGAGAAGTGTACACTGTT
AAAGTATTAGAAAAGAAAGTAAAATAATCTAACCTTTCACTTGGTGAGTT
TTCAAAAGCTTAGTTTACACAGTACAAGCTAAGACAGCTTTTTATTTACA
CTAATGTCTTTTCTGATTGCTTTGTTGAGTCTTTATTTTTCACTTTCATT
AAATGAGTTTGAAATACATTCTACAGGTCTTTCCTGTTCACATGTAAAAA
TGAGTTGCTGCCGACAATCAAATGAAGCACCAAGATGTATGTAAAACATA
CTACATATGTCCTTCCTTACGGATTTTTACGCTCCCCTAAGCT
NNCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCTATGACT
TTTATCAGGAAGGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAA
TGAAATGCTCATGTGATTTTTGTCTTTGAGTTGGTGTATATAGTGAATTA
CAGTGATAAATTTCCATGTATTAAACCATCCCTTGGATGAAGCCTACTTG
GTCAGGATGAATGATCATTTTGATGTGTTCTTGGATTCCATTTGTGAGGA
TTTTATTGAGTATTTTGCATCGATATTCTTTTTTAAAATTGGTCTGAAGT
TCTCTTTCTTTGTTGGAACTTTGTGTAGTTTAGGTATCAGAGTAATTGTG
GCTTCATAGAATGAATTAGGTAGAGCATCTTCTGATTCTATTTTGTAGAA
TAGTTTGAGGAGAGTTGGAATTAGGTCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCACCTGGTCCTGGGCTTTTTTTGGTTGGGAAACTATTC
ATGACTGCTTCTATTACTTTAGGGGAAATGGCACTGCTAATGCCAAACAC
ACAAGTGGATGCTCACAGCACGCTATTGCATTGAAGACACCGCCGGCCCC
CCATGGAGGACCTATTATAATTTTCTCCAGGCACTTGATAGGCTCTGTCA
CACCTATAGGGGGAACCACTTTACTTACTTACCCCACTATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_e03.b1 MSMg01no389_e03.b1 CHROMAT_FILE:
MSMg01no389_e03.b1 PHD_FILE: MSMg01no389_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:48 2005
         (356 letters)



>mm_chr5_13388673_13389428
          Length = 756

 Score =  658 bits (340), Expect = 0.0
 Identities = 352/356 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaattattttataggaataatcatgttgaagctttacacaagcgaaagctttagtatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctaattattttataggaataatcatgttgaagctttacacaagcgaaagctttagtatgc 497

                                                                       
Query: 61  ttttggactggcatgtcaggatgaaaataaaaacccttctgctgacgtggagctgattga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 ttttggactggcatgtcaggatgaaaataaaagcccttctgctgacgtggagctgattga 437

                                                                       
Query: 121 gttacatttaacaggatgcagggcatggcgcttcagctatcttacggtggcgggctgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gttacatttaacaggatgcagggcatggcgcttcagctatcttacggtggcgggctgctt 377

                                                                       
Query: 181 gccaccccagaagcaagatcatgtttcctctgccccatgcaatttcagaaagctttcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gccaccccagaagcaagatcatgtttcctctgccccatgcaatttcagaaagctttcata 317

                                                                       
Query: 241 gatactacatgattggcactgtggccctcttcccaatctgatttatttgaatgttactat 300
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatgctacatgattggcactgtgtccctcttcccaatctgatttatttgaatgttactat 257

                                                                   
Query: 301 caccgtgagaagtgtacactgttaaagtattagaaaagaaagtaaaataatctaac 356
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagcgtgagaagtgtacactgttaaagtattagaaaagaaagtaaaataatctaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)