BAC Information

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BAC

Clone NameMSMg01-389I14
Chromosome5 (Build37)
Map Location 141,590,693 - 141,590,953
singlet/doubletsinglet
Overlap genenone
Upstream geneMad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
Downstream geneLOC623466, Sdk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389I14.T7 (MSMg01no389_i14.b1)MSMg01-389I14.TJ (MSMg01no389_i14.g1)
ACCAG491768AG491769
length825750
length of high quality
(start - end)
274 (77 - 350)289 (337 - 625)
definitionCHROMAT_FILE: MSMg01no389_i14.b1 PHD_FILE: MSMg01no389_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:10 2005CHROMAT_FILE: MSMg01no389_i14.g1 PHD_FILE: MSMg01no389_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCTGCTGCAGTCTCCAGAGCAGCTGGATAACGGACATGA
GGGTTCCCAAGACTAGCACCCTAGAAAATTTTCTGAGCATTGCTGGTGAC
TTTAACTACAAAAAATTGAAAAAAAAAAAAAGCAGAGGACATCCCACAGG
AGAGGAGCCAAATGACCAGCTCATCAGTTAGGAAGAAAGGAGCTACCCTA
AGTGAGGGCTATAAGCTAGATTTGCATGTTAACTTATTTTATAGTGTGTG
TATGTACATGTGTATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGCCCCCTCTTCCCTCTGCCTTCCCCTGACGGCGGGGCGCCGGCTG
TCTCCTTTCCCTGTCCTCCGTCCCCCTCCCCTTCCTGCTCGTTCCCCCCT
CTTCCTCTTCTTCTTCTCTCCCCTTCCCCTCCCTCTCTCCCCTCCCCCCC
TCCCTCCCTCCCTTCTCTCCTTCCCTTCCCCTCCTTCCCCTCCCCTTCCC
CTCTCCGTCCTTCCTCCCCCCTCTTCCCCTTCCTCCCTTCCTCCCCTTCT
TCCCCTCTCCTCCCCCCCTTCTCCTCCTTCCCTCCCCTCTCTCCCCCTTC
TCTTCTTCCCTCCCCCCTTTTTCCTCTCTTTTCCTCCCTCCCCCTCCCCT
CCTTTTCCCCCCTTCCCCTCCCTTTCCTCCCCCCTTTCTCCTCCCCTTCC
TTCCTCCCCCTCCCCTCCCTTCTCCCCCCTCTCTTTTCCCTCCCCCCTCT
TCCCTCCCCTTCCTTCCCCTCCTTC
NAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTCATTCTAAGTATG
AAAGAGTGGAAATGGGGGCCAGGCATGGTGGTGCACATATGTGAGGGGAC
AAGGCGTGGTGGCACACATATGTACTCTCTGCACTTGGGAGACTGAGAAA
GGAGGATGGCCTTGTCTCACAATTTTAAGGGCTGGTCATGTAGCTCTGTT
GGTAGAGTGTTTGCCTGGTTTGCACAAAGCATGAATCCATGTAAGACATC
TGTAATCCCAGTATTTGAGAAGTGGAGTGTATATTATCAGAGGGGTATCT
TCAGTAAACAGTGAGGTTAAGGCCAGCCTGGGTTGCGTGAGATTGTGCCT
TTTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAAAAGAAGAAGAAAATGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGGGGGNANAACTGGGGGGNTTTTTTTTATAT
CACAAAAAATTAAGATCGGGGTTTTCTTATCCCCATGGAGGAAAAACCCC
CAACCCGCTTAAAAGAGAACTAAACTGGTTATACCCCGTTTAAAGTTTAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_i14.b1 MSMg01no389_i14.b1 CHROMAT_FILE:
MSMg01no389_i14.b1 PHD_FILE: MSMg01no389_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:10 2005
         (274 letters)



>mm_chr5_141590536_141591210
          Length = 675

 Score =  416 bits (215), Expect = e-121
 Identities = 248/261 (95%), Gaps = 5/261 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcagctggataacggacatgagggttcccaagactagcaccctagaaaattttctga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agagcagctggataatggacatgagggttcccaagactagcaccctagaaaattttctga 359

                                                                       
Query: 61  gcattgctggtgactttaactacaaaaaattg-aaaaaaaaaaaaagcagaggacatccc 119
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 358 gcattgctggtgactttaactacaaaaaattgaaaaaaaaaaaaaagcagaggatatccc 299

                                                                       
Query: 120 acaggagaggagccaaatgaccagctcatcagttaggaagaaaggagctaccctaagtga 179
           |||||||||||||||||||||||||| |||||  | ||||||||||||||||||| ||||
Sbjct: 298 acaggagaggagccaaatgaccagcttatcagccatgaagaaaggagctaccctaggtga 239

                                                                       
Query: 180 gggctataagctagatttgcatgttaacttattttatagtgtgtgtatgtacatgtgtat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gggctataagctagatttgcatgttaacttattttatagtgtgtgtatgtacatgtgtat 179

                                
Query: 240 gc----gtgtgtgtgtgtgtg 256
           ||    |||||||||| ||||
Sbjct: 178 gcacatgtgtgtgtgtatgtg 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space:   176490
Effective search space used:   176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)