Query= MSMg01no389_i19.b1 MSMg01no389_i19.b1 CHROMAT_FILE:
MSMg01no389_i19.b1 PHD_FILE: MSMg01no389_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:11 2005
(449 letters)
>mm_chr5_47036969_47037817
Length = 849
Score = 801 bits (414), Expect = 0.0
Identities = 442/452 (97%), Gaps = 4/452 (0%)
Strand = Plus / Plus
Query: 1 aagaaaagatttgtataaactggtttaaaatactccatttattttcagcaagctggattt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aagaaaagatttgtataaactggtttaaaatactccatttattttcaccaagctggattt 260
Query: 61 attatctaaaacttttcaaatatttaagaagagtatttggaattggatatcaagcactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatctaaaacttttcaaatatttaagaagagtatttggaattggatatcaagcactta 320
Query: 121 taccagcaattttaatattaatatttatctttgttgaaagctgtatttgtatataacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccagcaattttaatattaatatttatctttgttgaaagctgtatttgtatataacaaa 380
Query: 181 ctttatagagattaaaatgacttatcatgtcttttaggacc-tacactatgtaaccaagc 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ctttatagagattaaaatgacttatcatgtcttttaggaccctacactatgtaaccaagc 440
Query: 240 caagaaaacattaagcaggactgtgagtgccaaagggaactgtggctcaatgaaaatgct 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagagaacattaagcaggactgtgagtgccaaagggaactgtggctcaatgaaaatgct 500
Query: 300 tttgttatctctacctctgggctccccatgtgatttaaagtactgaagttaatgttgata 359
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgttatctctacctctgggctcctcatgtgatttaaagtactgaagttaatgttgata 560
Query: 360 taaatgaaagacctgacacacaca--tcaatgcaacagcacagacattcccaggatagac 417
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 561 taaatgaaagacctgacacacacacatcaatgcaacagaacagacattcccaggatagac 620
Query: 418 cccacagaaacatcaccaactgatttttgaca 449
|| ||||||||| |||||||||||||||||||
Sbjct: 621 cc-acagaaacaccaccaactgatttttgaca 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_i19.g1 MSMg01no389_i19.g1 CHROMAT_FILE:
MSMg01no389_i19.g1 PHD_FILE: MSMg01no389_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:11 2005
(222 letters)
>mm_chr5_47197637_47198263
Length = 627
Score = 397 bits (205), Expect = e-115
Identities = 220/227 (96%), Gaps = 5/227 (2%)
Strand = Plus / Minus
Query: 1 atataaagaaagact----gggggcgggg-ggagtgaagaagcaaaatagagaagaggaa 55
||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 427 atataaagaaagactgaggggggggggggcggagtgaagaagcaaaatagagaagaggaa 368
Query: 56 tagagagtaatccaaattttcacaaagataaaataaattttaatgagacaaagatgcaag 115
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 367 tagagagtaatccaaattttcacaaagataaaataaattttaaggagacaaagatgcaag 308
Query: 116 tagaaattttaagatcatcaaagaataatcagtttaaggagatgtattgcttcttggagg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tagaaattttaagatcatcaaagaataatcagtttaaggagatgtattgcttcttggagg 248
Query: 176 aggaaaagtattaaaaggtgcttaagtaaaatcaagtatttgaatca 222
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aggaaaagtattaaaaggtgcttaagtaaaatcaagtatttgaatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 627
Length adjustment: 9
Effective length of query: 213
Effective length of database: 618
Effective search space: 131634
Effective search space used: 131634
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
