BAC Information

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BAC

Clone NameMSMg01-389J10
Chromosome5 (Build37)
Map Location 53,380,567 - 53,380,811
singlet/doubletsinglet
Overlap genenone
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4
Downstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389J10.T7 (MSMg01no389_j10.b1)MSMg01-389J10.TJ (MSMg01no389_j10.g1)
ACCAG491807AG491808
length781752
length of high quality
(start - end)
62 (195 - 256)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no389_j10.b1 PHD_FILE: MSMg01no389_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:14 2005CHROMAT_FILE: MSMg01no389_j10.g1 PHD_FILE: MSMg01no389_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTCCTCTAAAATTTGCGGTGGNTAAANGACTCACTATATCCCACACA
ACCGCNGGAATCTAGGCCTTCCAACGACACTTGGCTAGNTGNCGCCTCCA
AAAAAACAAAAGAAAGCAAAACACAATAAAGAAGAGCTCAGGAATTCTCA
AGGGCTCAGAAGTAGCAGTTCTGCGGTATGGAGTTCTGCAGTGTTCTCGC
TGTTTTTTTTTTTTAATTATTTTTTTAAGACTTATTTATTTTATATATAT
GAGTACACTTTATTTTGTCTTTCACACACACCAGAAGAGGGCACTGGATC
CCGCTACACATGGTTGTGAGCCATCTTTCTTTTTCTGGCAATTGAACTCC
GGACCTCCGGAAGAACTTTTTGTGCTCTTACCAGCTGAGCCATCTCGTCT
GCCCCCTCACTGTTTTTTATAGAACCCCCACACCTCTCCCGGTTCCCTTG
GGTCCCCGGCTCTTCCCAGATACTTTTTCCTGTTTGGTGCTATTTACTTT
TGGCTCATCACGCCACTACTGCACTACTCGGCACTTCCCTGTCCAGCCTC
CTCTTTTTCTCCCTTCTCCCTACCCTCCCCCTCCCCCTTTCTTCCCTACC
TCCCTTTCCTGCCTACCTTCCATTTTTTCCTCCCTCTTCCCCTACCACCT
CCTCTTCTCCTTTTTTGCCCCTCTTTTTTCCCTTTCCCCTTATTCCCGCC
TTCCTCCCCCTCCCCCTCCCTTCCCCCTTCTCTCTCCCCCCTTTCCTTCC
CCTTCACTTCCCCCTTCTTCCTCCCCTTTTC
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCCAGCTTGGATTAAATAGC
AGGAGCCTACCTCCAAATAACAACTAAACTAGAACCAAAGCAGAGATATC
CAAATAAGGCACTTAGCCCAGGCTGGCCACCTCCAGCCTCAAACCTCCTG
GAAACAGGGAGTGAGCTGCCACACCCTTTGTCTTTTTAAGAATTCCTTCA
GGCCAAGTGGTTGTGGCCACATGCCTTTAATCCCAACACTCCAGAGGCAG
AGGCAGGTGGATCTCTGTGAGATATATTGNCTACAGAATGAGTTCCAGGA
TAGCCAAGGGTACATATTAAAAACCTTATCTCCAAAAATTTTTTTTAATT
TAAAAAAAATAAAAATAAAAGTGTGGAGGTGAATAAGGGTGAGGCAGGTC
ATTTGGTGAGATGCCCCAGGCCACACAGCAGAAAATGAGCTTGTGAGTCC
CAAGCCCAGGCCCCTGGCCTGAGTTCTCTTCCCTCTTCAGAATGCAGGTG
CATCTTCTGGGTTTATTGACCCTGTCTGTGCCCTAAGCCTGGAGCCAGCT
GGACTTTCTGGAACCCTGGGCATCTCTGATGCCATGAAAGTTTGCCTCAA
AGGTGCCAGGAAGGTATTTTTTTTATGGGGTGAATTGCTTAAAGGCCTCA
GTAATCATCCCCATAAAGGCAGGGGGGCTTAATCTCGTTTCTGGGCATTA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_j10.g1 MSMg01no389_j10.g1 CHROMAT_FILE:
MSMg01no389_j10.g1 PHD_FILE: MSMg01no389_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:15 2005
         (245 letters)



>mm_chr5_53380440_53381084
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccagcttggattaaatagcaggagcctacctccaaataacaactaaactagaaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggccagcttggattaaatagcaggagcctacctccaaataacaactaaactagaaccaaa 313

                                                                       
Query: 61  gcagagatatccaaataaggcacttagcccaggctggccacctccagcctcaaacctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcagagatatccaaataaggcacttagcccaggctggccacctccagcctcaaacctcct 253

                                                                       
Query: 121 ggaaacagggagtgagctgccacaccctttgtctttttaagaattccttcaggccaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggaaacagggagtgagctgccacaccctttgtctttttaagaattccttcaggccaagtg 193

                                                                       
Query: 181 gttgtggccacatgcctttaatcccaacactccagaggcagaggcaggtggatctctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gttgtggccacatgcctttaatcccaacactccagaggcagaggcaggtggatctctgtg 133

                
Query: 241 agata 245
           |||||
Sbjct: 132 agata 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)