Query= MSMg01no389_k14.b1 MSMg01no389_k14.b1 CHROMAT_FILE:
MSMg01no389_k14.b1 PHD_FILE: MSMg01no389_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:20 2005
(318 letters)
>mm_chr5_62406086_62406803
Length = 718
Score = 528 bits (273), Expect = e-154
Identities = 300/311 (96%), Gaps = 5/311 (1%)
Strand = Plus / Minus
Query: 11 gaattcgttt---cttcagctgctgggtggagcctctcagaatagttatgctagtctcca 67
|||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 580 gaattcgtttcaac--cagatgctgggtggagcctctcagaatagttatgctagtttccc 523
Query: 68 atctatgaatccaaactgacagatacaaatgtagcctgaggcttcaagatagttgaagga 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atctatgaatccaaactgacagatacaaatgtagcctgaggcttcaagatagttgaagga 463
Query: 128 aggcatggctgcaatctatccctattgatcctctgagaacagttcagcctactcaccatc 187
|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct: 462 aggcatggctgcaatctatccctattgatcctctgagaactgttcggcctgctcaccatc 403
Query: 188 ccaattggcaggggctgctactgcattcatttatgtctgtctcatacagggcacctatgt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ccaattggcaggggctgctactgcattcatttatgtctgtctcatacagggcacctatgt 343
Query: 248 atccaaagcatctttgacattttgtgtctgtctctttttgtcagcttttaaaatactgga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atccaaagcatctttgacattttgtgtctgtctctttttgtcagcttttaaaatactgga 283
Query: 308 tttaagaccct 318
|||||||||||
Sbjct: 282 tttaagaccct 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_k14.g1 MSMg01no389_k14.g1 CHROMAT_FILE:
MSMg01no389_k14.g1 PHD_FILE: MSMg01no389_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:20 2005
(551 letters)
>mm_chr5_62256995_62257947
Length = 953
Score = 998 bits (516), Expect = 0.0
Identities = 544/556 (97%), Gaps = 8/556 (1%)
Strand = Plus / Plus
Query: 1 ataagtgtgtatgtgttgttaattttccttttgcaatgaactattctaataattcacctc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagtgtgtgtgtgttgttaattttccttttgcaatgaactattctaataattcacctc 260
Query: 61 tgagatgagtaactgctttctgattttattcagaaaatgcaaataaaattaagagaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagatgagtaactgctttctgattttattcagaaaatgcaaataaaattaagagaaatt 320
Query: 121 tgacatttttctatgaggttataacaagttatatctacttattcttttctcagaatatca 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tgacatttttctatgaggttataacaagttatatctacttattctcttctcagaatatca 380
Query: 181 gtgatatctggggcaatggccaatacctgtgcttcctcttaattatcttctttgtctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatatctggggcaatggccaatacctgtgcttcctcttaattatcttctttgtctcct 440
Query: 241 tttgtgtattta--t--agttatatctgttgctctttttgctctcagtacatccatttta 296
|||||||| | | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tttgtgta---acatggagttatatctgttgctctttttgctctcagcacatccatttta 497
Query: 297 cttatgagtatgcatctcttaatttaattaaactaatctcatgaactatttaagggtctt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttatgagtatgcatctcttaatttaattaaactaatctcatgaactatttaagggtctt 557
Query: 357 ccaaatagaaaatcccaaatacaaaaacacaaaatacagtaaaaatgataatttgaatag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccaaatagaaaatcccaaatacaaaaacacaaaatacagtaaaaatgataatttgaatag 617
Query: 417 gtcatgattcaacagatttatgatcttgaaaaaatattcatctttcaaataattccagaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtcatgattcaacagatttatgatcttgaaaaaatattcatctttcaaataattccagaa 677
Query: 477 ttgtgttcataaagtacatgtcaacattaatggttcaaa-tattaccaaaattgataaca 535
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 678 ttgtgttcataaagtacgtgtcaacattaatggttcaaaatattaccaaaattgataaca 737
Query: 536 tacaagtaaaatgaaa 551
||||||||||||||||
Sbjct: 738 tacaagtaaaatgaaa 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 953
Length adjustment: 10
Effective length of query: 541
Effective length of database: 943
Effective search space: 510163
Effective search space used: 510163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
