BAC Information

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BAC

Clone NameMSMg01-389M10
Chromosome5 (Build37)
Map Location 75,717,238 - 75,717,483
singlet/doubletsinglet
Overlap genenone
Upstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
Downstream geneLOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M10.T7 (MSMg01no389_m10.b1)MSMg01-389M10.TJ (MSMg01no389_m10.g1)
ACCAG491950AG491951
length781763
length of high quality
(start - end)
---246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no389_m10.b1 PHD_FILE: MSMg01no389_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:29 2005CHROMAT_FILE: MSMg01no389_m10.g1 PHD_FILE: MSMg01no389_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCCCCCATCCACAAATTGTGGTGGNAAAANGACCCACACATCCACAC
CCACCCGCGGAANNCCGATACTCCCAAAACACCCTTAGGCACCCCCCTTC
TGCTCACCTGAAAGGCTTTCACTATCTAGAGCAAACAAACAAATCAACAA
ACAACCCACGAGAACGCTTTGTGATTGCTGTTGCTCTGGGACTGTGCGCT
TTTGCGTTCATCACCTTTATGCAAATAGCCCTGAGCCTGTCCACAAATGA
TTTTTTTTTTCTACTGTGCTCCATGCTGGCACCCCTGAGTCCTGATCTCA
TTACCTCCTGCATACTCCACACCATCTTCTTGATTTCATCCATTGCGCCG
TCTCACACATTGTCCCCACTTCTTCCTGCCCCCAGCATAGCAACTCGTAC
GCCCTTGTTTCCCCTTGCTGACCCACCCCCCAAAGGCTACAGCTCGGTCA
CTGCTCCCTCTCTCTCCCTCCACCACTCCTCTCCCTTTCTACGCCCTACC
CTCCGCCCCTCCCTCCCCTCTCCTCCCCGTCCCCCTCTCCCTTCCCCCGC
CCTCCCTTCTCCCCCCTCTCCCCCCCCTCTCCCCCTACCTTTCCCTCCCC
CACTCCTTCTTACCTCTCCCTTCTCCTCTCTTATCCTCTCTTCTCCTCCC
CTCTCTGTTCCCCCTTCCCCCCCCCCTCCTCCTCCCTTTTCCTCCCCTTC
CTTCCTCCCCCCCCCTTCCCTTCTCTCACCCTCTCTTTTCTCTCCCCCCC
TTTTCTCCCCCGCTCTCCTTCCCCTCCTTCG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCATGTAAACTAAGGTAGCCTC
AAAGAAACAGGGATCCACCTGCCTCTGCCTCCTGAGCTATGGGATTAGAG
ATGTGGACCATCACATTGATCTGATGACTTGATTTTTTTTCCATTCTAAG
GACTTTGCCTGCCATTATCTCACCTATTTGTCTCTGTAACCTCAAAGATG
GGGCTTCTTCTATATCTTCAGATTTCCCTGGTTCTTCGATGGTTCTATTG
GCATGTGTATCTTCTATTGCTTTCTTTTTTAGATTGGGGGCTTGCATTTG
GTATAGATAGATACTTGGGTTTTTTTTTTATTGTTTGTTTGCTTTTAAAT
ACCCGTGGAATGAATGTACAAACAGTGGCAATTTTAAAATGCTTCAGAAT
GCATGGTGAGTTGATTTGCTAGAATTCTCTGAAGGCTTGTGATTGTATGC
ACACATCCCAGGCTGCTTGTTCAAATGTGATCACCTGTGTATATTTAAGA
ACATAAGCCCTTTCTCAGCTAAGACTCTTAGGTTGGCTTACCTCCAAATT
TAATTCCATTTTCTCCATTAAGTGAACGCTTGGGCTTAAAGCTTAAATAC
CTTCAGCTTAAATTTTTTTATTTTTAACCACCCCAAACACCAAATTTAAA
ATGGTTTAACCTCAATTCCGGGGGAACCAAAAACACGAACCTCTCCAATC
TATTTTTAATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m10.g1 MSMg01no389_m10.g1 CHROMAT_FILE:
MSMg01no389_m10.g1 PHD_FILE: MSMg01no389_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:29 2005
         (246 letters)



>mm_chr5_75717038_75717683
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatgtaaactaaggtagcctcaaagaaacagggatccacctgcctctgcctcctgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatgtaaactaaggtagcctcaaagaaacagggatccacctgcctctgcctcctgagc 260

                                                                       
Query: 61  tatgggattagagatgtggaccatcacattgatctgatgacttgattttttttccattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgggattagagatgtggaccatcacattgatctgatgacttgattttttttccattct 320

                                                                       
Query: 121 aaggactttgcctgccattatctcacctatttgtctctgtaacctcaaagatggggcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggactttgcctgccattatctcacctatttgtctctgtaacctcaaagatggggcttc 380

                                                                       
Query: 181 ttctatatcttcagatttccctggttcttcgatggttctattggcatgtgtatcttctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctatatcttcagatttccctggttcttcgatggttctattggcatgtgtatcttctat 440

                 
Query: 241 tgcttt 246
           ||||||
Sbjct: 441 tgcttt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)