BAC Information

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BAC

Clone NameMSMg01-389N12
Chromosome5 (Build37)
Map Location 81,556,765 - 81,557,053
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389N12.T7 (MSMg01no389_n12.b1)MSMg01-389N12.TJ (MSMg01no389_n12.g1)
ACCAG492002AG492003
length758742
length of high quality
(start - end)
289 (78 - 366)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no389_n12.b1 PHD_FILE: MSMg01no389_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:34 2005CHROMAT_FILE: MSMg01no389_n12.g1 PHD_FILE: MSMg01no389_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATAATTTGCGGNCGCTAAANGAATCACTATTTCGACACAATCCG
CGGAATTCAAGGATTTTCATGTCACAACGGCTGACTTGGTTTTTGTTCCC
CACCAGGACAGTCAATGGGGGCAAACACCAAAGAAAGATAACTGCTAGCC
CTTTTGTGGGAAATAGGAAATGTTGACACCAGTGAGGATGGCTGTAAGTG
TATTTACAATATTGACACGAGATTGGCAGCTGCTCACATTCTGCCTGAAA
GGTTTACTACTGGCAGGGACTCCCAGCAGCTGCTTGCTGGGAACGTGAGA
AAACATTTGGACAGTTAGGGTATTTTGATTTCCCCCCTGAAAATCTGTTT
GGCAAAACTTCCTGGCAGCTAATAACATTATGTGAAAAAAAAAAAAGATC
TTTTAATGTGTTCACATCTCTTCATAAAACTTATATTGCCAATATAGATA
ACATTTTCAAAATCTATGATTTACAGACATTTGATTGCTGAATAATGTTT
CTTTATTAGATTGTACCACTGGGGACTGGATTACAAGGCAATATTAGTAT
TTTTAACGAAAGTTCTCTCCACAGAGTACCCTCCCCTTTCCAAGACTTGC
CACCTTCCCGGCCTGCCGTACATTTTTATCACATCCCTGACCCGAGACCC
TACATCTTGATTCTACCCTTTGTGATCCCTTTCGATTCTTCCTTAAGACA
CCCCCCTCACCTTGCCCGCCTTCCCCCCTCCTTCCCTTCCACCCCTTCCC
TCCCTTTC
NNNCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAATTCTCATGTATGCTGTGAAGTCAGT
AGTATAAACTTTCACTAATTTCTTTATGACAGCACTTAGTCCTATGAACT
TTCCTCTTAACACTGCTTTCCTTGTGTCCCATAAGTTTGAATATCTTGAG
TCTTCAATTTCATTGACTTCTAGAAATTTTAATTCTAGAACTCTTTAATT
TCTTTATTTCTTTTTGTTCCAGTGGTCTCTGTGTAGAGAATTGTTCAGAT
GCCATGAGTTGGTAGGTTTCTANTTCGTTGAAATCCAGCTTTAATCCATT
GTGATCTGATAAGATGCAAGGGGTTATTGCAATCTACCTATATCTGTTGA
GGTTTGCTTTGTGACCAACTATATGGTAAATTTTGAAAAAGGTTCTATGA
GTTGCTAAGAAGAAAGTATATGCTTTTGTTTGGGTGAAATGTTCTGAAAA
TAACTGTTAGGTTTACTTGGTTAACAAGTTGTTAGTTTCATTATTACTCT
GATTTGTTTCTCTTTGATGATCTGTCCATTGGTGAGGTNGGGTGTCTCAC
AATTAATGTGTGAGATTTGATGTATGATTTAAGCTTTGGCAATGTTTTTT
ATTGAATACTCTTCCATTTGGGCATAAATATTCAGACCTGAAACTTATTT
TAGTGGATTTTTCCTCCATATGAACACGTGTCCTTTTGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_n12.b1 MSMg01no389_n12.b1 CHROMAT_FILE:
MSMg01no389_n12.b1 PHD_FILE: MSMg01no389_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:34 2005
         (289 letters)



>mm_chr5_81556565_81557253
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggctgacttggtttttgttccccaccaggacagtcaatgggggcaaacaccaaagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cggctgacttggtttttgttccccaccaggacagtcaatgggggcaaacaccaaagaaag 430

                                                                       
Query: 61  ataactgctagcccttttgtgggaaataggaaatgttgacaccagtgaggatggctgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ataactgctagcccttttgtgggaaataggaaatgttgacaccagtgaggatggctgtaa 370

                                                                       
Query: 121 gtgtatttacaatattgacacgagattggcagctgctcacattctgcctgaaaggtttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtgtatttacaatattgacacgagattggcagctgctcacattctgcctgaaaggtttac 310

                                                                       
Query: 181 tactggcagggactcccagcagctgcttgctgggaacgtgagaaaacatttggacagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tactggcagggactcccagcagctgcttgctgggaacgtgagaaaacatttggacagtta 250

                                                            
Query: 241 gggtattttgatttcccccctgaaaatctgtttggcaaaacttcctggc 289
           |||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gggtagcctgatttcccccctgaaaatctgtttggcaaaacttcctggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)