BAC Information

Click to search

BAC

Clone NameMSMg01-390C15
Chromosome5 (Build37)
Map Location 53,354,970 - 53,355,373
singlet/doubletsinglet
Overlap genenone
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4
Downstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390C15.T7 (MSMg01no390_c15.b1)MSMg01-390C15.TJ (MSMg01no390_c15.g1)
ACCAG492244AG492245
length727727
length of high quality
(start - end)
70 (99 - 168)532 (76 - 607)
definitionCHROMAT_FILE: MSMg01no390_c15.b1 PHD_FILE: MSMg01no390_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:59 2005CHROMAT_FILE: MSMg01no390_c15.g1 PHD_FILE: MSMg01no390_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCACCTCTATATTTGCGGCGCTAAACGAATACCATATTCACAACACCGC
GGAATTCTCAAGGGCTCCCAACCACCAGCTCTGCGGNATGNAGTTCTGCA
GTGTTCTCGCTGTTTTTTTTTTTTAATTATTTTTTTAAGACTTATTTATT
TTATATATATGAGTACTCAGTAGCTTGGCTTTCAGACACACCAGAAGAGG
GCACTGGATCCCGTTACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGA
ATTGAACTCTGGACCTCTGGAAGAACAGTCCGTGCTCTTACCAGCTGAGC
CATCTCGCCAGCCCCCTCACTGTTTTTATAGAACCCAGAAATCTCCCATG
GNCCTTTGGGTCTCTTGTCTTCCCAGATAAGCATCGCAGTTTGGGGCTAT
TCACAGCTGGGGAGGAAAGCCGAGAGAGGACTTATAGGGAGCTTCCTGGC
CAGCTCAGCAGGGCATCAGCGTCCAGATGTGAGCGCTGCAGGGTATTTGA
ACAGGGTGTTTGGGAGGGAGAGCAAAAGAGCACAGAAAGAGAGGAAGGAG
GCAGTTTCCCTGGGACCGTTGTACAGAGACTAGCTGCCGAGAGAACAAGC
CCGACCCCGATGAAGACCGAACGAGCCCGCGAATGAGAAGGAGACCGAAG
ACTAGAACTTATTGCCCTTATTACCATCAGGTCTAGCACAACCCCTCCCG
AAAGGCCCAGGAAGACAACCCCCATCT
NNNCCCCGATGAAGTGNGTAGGCCTGGNGGCCGCCTGGCTTCCAAATTTA
GGTGAACTATATAAGGATCCCCGGAATTCTTTGCTGTTTTTCTACCCTGG
ACACTAGGCTAGCTGTCCCCTCAGTCTTGTGGGGCTTCTCCCATCTGCAC
AGTCTGTCTCCTGTCTCCCTGTAGAAGCACCAGGGTTATAGAGGCTCATG
CTCTGCCTTTTACCAAGTCTGAAAGTTCCAACTCCACTAAGGTAGATTTT
ATTCCTTATGTCATCTCTCCAGAGCTACTTCTGTTTTGAGACAATGTCTC
CTGCAGCCAGGCTGACCTCGAACTTTATTTGTAACTGAGGGTGACCTTGA
TTTCCTAATCCTCTTGTCTCTACCTCCCAAGTTCTGGGTTTACAGATGTG
TGCCATCTCCTCTAACAAAATCCAATCTCTCCAACACTGTTACCATGGCA
GTAACATTTCCACAGGAGTTTGATAGGTGTCTTAGTCAGGGTTTGTATTC
CTGCACAAAACACCATGACTGAGAAGCAAGTTGGGGAGGAAAGGGTTTAT
TCAGCTTACACTTCCACATTGCCGTTCATCACCAAAGGAAGTCAGGACTG
GATCTCTCACATGGTAGGAACCTGGAAACAGGAGCTGATGCACAGGCCAT
GGAGGGCGCTGCCTACTGCCTTGCTTCTCCTGACTTGCTCCGCTTGCTTT
CTTATACAACCCCAGACTACCAGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_c15.g1 MSMg01no390_c15.g1 CHROMAT_FILE:
MSMg01no390_c15.g1 PHD_FILE: MSMg01no390_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:59 2005
         (532 letters)



>mm_chr5_53354970_53355902
          Length = 933

 Score =  750 bits (388), Expect = 0.0
 Identities = 400/404 (99%), Gaps = 1/404 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttgctgtttttctaccctggacactaggctagctgtcccctcagtcttgtggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 attctttgctgtttttctaccctggacactaggctagctgtcccctcagtcttgtggggc 345

                                                                       
Query: 61  ttctcccatctgcacagtctgtctcctgtctccctgtagaagcaccagggttatagaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttctcccatctgcacagtctgtctcctgtctccctgtagaagcaccagggttatagaggc 285

                                                                       
Query: 121 tcatgctctgccttttaccaagtctgaaagttccaactccactaaggtagattttattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 284 tcatgctctgccttttaccaagtctgaaagttccaactccactaaggcagattttattcc 225

                                                                       
Query: 181 -ttatgtcatctctccagagctacttctgttttgagacaatgtctcctgcagccaggctg 239
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tttaagtcatctctccagagctacttctgttttgagacaatgtctcctgcagccaggctg 165

                                                                       
Query: 240 acctcgaactttatttgtaactgagggtgaccttgatttcctaatcctcttgtctctacc 299
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 acctcgaacttgatttgtaactgagggtgaccttgatttcctaatcctcttgtctctacc 105

                                                                       
Query: 300 tcccaagttctgggtttacagatgtgtgccatctcctctaacaaaatccaatctctccaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tcccaagttctgggtttacagatgtgtgccatctcctctaacaaaatccaatctctccaa 45

                                                       
Query: 360 cactgttaccatggcagtaacatttccacaggagtttgataggt 403
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  cactgttaccatggcagtaacatttccacaggagtttgataggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space:   481806
Effective search space used:   481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)