BAC Information

Click to search

BAC

Clone NameMSMg01-390O21
Chromosome5 (Build37)
Map Location 31,579,860 - 31,580,261
singlet/doubletsinglet
Overlap geneIft172
Upstream geneD5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3
Downstream geneFndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390O21.T7 (MSMg01no390_o21.b1)MSMg01-390O21.TJ (MSMg01no390_o21.g1)
ACCAG492824AG492825
length755750
length of high quality
(start - end)
403 (52 - 454)520 (80 - 599)
definitionCHROMAT_FILE: MSMg01no390_o21.b1 PHD_FILE: MSMg01no390_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:59 2005CHROMAT_FILE: MSMg01no390_o21.g1 PHD_FILE: MSMg01no390_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATAATTGCGGNCGCTAATAGACTCCTATAGTTCGAGGATCCG
CGGAATTCCTGATCCTCCTGCCTCAGACCCTTGAGTATTGGGATTACAGA
TAGAAGCCACAATGCCCAGTGTCATAATCTCTATGTCTCCAAAGTTAAGA
CTACCGCATAACTAGTCTGCACGCTGGCTGGTCTCCAGTTGGTCGCCTTC
CTGACTCGGCCTTTCTGCCTTTGTCCAAAGTCTGATTGTGAGCCACTGAG
CTCGCTGACCCTGGCTGACTCGAGGCTTCCTTCTCCTGCTCTATCTGTGT
GCCCCTCCACTCTTCGCTGCTCATTTCCCCTTGAGCACTCCATCACTCAG
GTGTATGTCATACACTTGGAGTATGACATCACCAAGGCCGTTTCAGTCAT
CAGTTATCTCTGGAACTCAGGACCACATTCAACTGTTTTCAACTGATTGT
TTCAAGTCAGGGTCAGATGAGGTAGCTGGAGCTGACCTACATAGAAGGGG
CTAGTCACAAACTCCCTCTCTTTGTGCCTTAGCTTTCTGGGGGCTGGGAT
GATAGCCATGTACCTCCCATAGACCTTTTAGGTAGCTGCAAAGTCAAGTA
AAACTATCTCGTAATCTAGAAAAGTTCCTAACTTTCTTGAATGGGCCTTG
TGGCCGCGGCTGCCTCAAACCCGGGCTAAAACCCACTTGCCCCGCGACCG
ATTTTAACTGACCTTCCCCCCCCCCCCCCTAAGTCTGGGAACAAAAAACT
GAAAA
NNNAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAACAGAAACATTAATAA
AATTGATCCTATTAGTTAACATAAGTAATCTAGAGATGATTTAAATACTA
TGGGAAGGTTTAAATGAATTATTTATTTTATTATTATATCTAAGTACACT
GTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATTTCATTACGGAT
GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGA
AGAGCAGTCTGTGCTCTTAGCCACTGAGCCATCTCTCCAGCCCAATAATT
TAGTTTTTGAGACATAATATAGCCTTTGCTAGCCTGGGCAGTGGTGGTGC
ACACCTTTAATCCCAGCACTCGGGAGACAGGCATGTGGATTTCTGAGTTC
AAGGCCAACCTGGACAGCCAGGGCTATACCGAGAAACCCTGTCTCGGAAA
AAAACAAAACAAAACCAAAAAAAAAAAAAAAAACCATACCTTCCTAATTT
CATATAAAGGACTTGATAATCTTATCAACAGGGTGACGTGAATCTTTGTG
GATTCCAAGAGACACTTGTACTAATTCTTCACAAACAGAGGCAATATTTC
TAACTCATTCTATGAGGACCTATTATCCTTATACTAAAACCAAACAAACT
AGTCCCTTGGTGGGGGGNACATGTTATTTAATCTGGCACTCCGAAAGCAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_o21.b1 MSMg01no390_o21.b1 CHROMAT_FILE:
MSMg01no390_o21.b1 PHD_FILE: MSMg01no390_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:59 2005
         (403 letters)



>mm_chr5_31579592_31580394
          Length = 803

 Score =  770 bits (398), Expect = 0.0
 Identities = 401/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcctgatcctcctgcctcagacccttgagtattgggattacagatagaagccacaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattcctgatcctcctgcctcagacccttgagtattgggattacagatagaagccacaa 611

                                                                       
Query: 62  tgcccagtgtcataatctctatgtctccaaagttaagactaccgcataactagtctgcac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgcccagtgtcataatctctatgtctccaaagttaagactaccgcataactagtctgcac 551

                                                                       
Query: 122 gctggctggtctccagttggtcgccttcctgactcggcctttctgcctttgtccaaagtc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gctggctggtctccagttggtcgccttcctgactcggcctttctgcctttgtccaaagtc 491

                                                                       
Query: 182 tgattgtgagccactgagctcgctgaccctggctgactcgaggcttccttctcctgctct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgattgtgagccactgagctcgctgaccctggctgactcgaggcttccttctcctgctct 431

                                                                       
Query: 242 atctgtgtgcccctccactcttcgctgctcatttccccttgagcactccatcactcaggt 301
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 430 atctgtgtgcccctccactcttcgatgctcatttccccttgagcactccatcactcaggt 371

                                                                       
Query: 302 gtatgtcatacacttggagtatgacatcaccaaggccgtttcagtcatcagttatctctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtatgtcatacacttggagtatgacatcaccaaggccgtttcagtcatcagttatctctg 311

                                                     
Query: 362 gaactcaggaccacattcaactgttttcaactgattgtttca 403
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaactcaggaccacattcaactgttttcaactgattgtttca 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)