BAC Information

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BAC

Clone NameMSMg01-391A17
Chromosome5 (Build37)
Map Location 113,511,937 - 113,512,271
singlet/doubletsinglet
Overlap genenone
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3
Downstream gene2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A17.T7 (MSMg01no391_a17.b1)MSMg01-391A17.TJ (MSMg01no391_a17.g1)
ACCAG492912AG492913
length781794
length of high quality
(start - end)
368 (66 - 433)335 (75 - 409)
definitionCHROMAT_FILE: MSMg01no391_a17.b1 PHD_FILE: MSMg01no391_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:08 2005CHROMAT_FILE: MSMg01no391_a17.g1 PHD_FILE: MSMg01no391_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGTAAACGACTACTATAGTCCGCAAATCCGCGGAATTCCTGTA
TCTTCCACTCACCAGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAGCAT
CATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATACAGCTTACATTT
TCATCATTAAAGGAAGTCGAGACAGGAACTCAAGCAGGTCAGGAAGCAGA
TGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCCCCT
GGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCCACGCCAGAG
ATGGTCCCACCCTTTAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAA
TGCCTTAGAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTT
CTCTGCGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACA
CACAGCTACTATGTGCCCACAGAACCTTTACCAAGCACACAGTAAGGCCA
AGGACAGGACAGGCCCGCGGGGTGACACCTTATTATCTGCAGGCGACACC
CAAAAAGGATGTCGCCGGTATCCACACCCAGGAACCCCCTACTTGGTAGC
GTATAGGTCTCACTCCTGGCCCGGCCGGGCCCGCGCATTTTGTTGGGCAT
TCCGGCAAAAACCGCAAAACCTCCGCGTGCCCTCACCCACCCATGGCTCC
CGGGGTGCCTTTTTTTTCCCCATCCTCTCTTTTTCCTCTCGTTTCTTCCA
CCTCCTCAATCCTTGCCCCCCCTTACCTCCN
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCACAACATGAGGTGA
ACTATAGAAGTCCCCACAAAATTCAAGAGTAGCCTCCATTGCAGGGTTGA
CGACAGCCTGAGCTGTCGCGATGAGAGGTCACGTGAGCACAGCACACATC
ACATGGCTGTCACTTGATTCCATTCCCCCAGGACCTCACCTACCACTGAT
CACATTAATGGCCACTTCCTGCCACGGGTGATGGAGCCAGTTGTCACTGT
CTGGGTGGTGCTGCAGACAGCGTGGCACCCTCTCCACACTGAATCGTCCT
GAGCACTGTGACATTNGTGCTTTTCTGTCTGCCATTCCCTAACCCACAGT
TCCGAACATCACCACCACTGCTGTTCAGAGCCACGTGCTCTTAGCAAGGG
TAGAATGGGACCCGCAGGGGGGAATCAGGGCCTGTCCTGCGACCGGCGGT
CCTGGGGCTGTTGCTTATTACCCCCCCCCCCCTTGCCCACCACCTTGCTG
CATCCTCACCCACCTCCTCTCACCCCACGAATGCCTCTTTTACCAATTTC
CCCTCCCCCATATCCACTTGCTCCCCCCCTTTGTTCTTACTTTCCCTTCT
TCACTTTCTCCCCTCCTTCTCCTTCCCTACTCCTTCCCCTCCCCAAACCC
TCCCTCCTTCTCTTTCCCCCCCCTCTTTCTTTCCCATTCCTTGTTCCCCC
TCCCCCCCCCACCGCTTCCCTTTCCCTACTCCCCCTACTCACCCTTCCCC
ACCCCCCTTTAACTCTTTCCTCTCCCTTCTCCCCTTTCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a17.g1 MSMg01no391_a17.g1 CHROMAT_FILE:
MSMg01no391_a17.g1 PHD_FILE: MSMg01no391_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:08 2005
         (335 letters)



>mm_chr5_113511737_113512471
          Length = 735

 Score =  603 bits (312), Expect = e-177
 Identities = 330/336 (98%), Gaps = 2/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagtagcctccattgcagggttgacgacagcctgagctgtcgcgatgagaggtcacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagtagcctccattgcagggttgacgacagcctgagctgtcgcgatgagaggtcacgt 260

                                                                       
Query: 61  gagcacagcacacatcacatggctgtcacttgattccattcccccaggacctcacctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcacagcacacatcacatggctgtcacttgattccattcccccaggacctcacctacc 320

                                                                       
Query: 121 actgatcacattaatggccacttcctgccacgggtgatggagccagttgtcactgtctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 actgatcacattaatggccacttcctgccacgggtgatggagccagttgtcactggctgg 380

                                                                       
Query: 181 gtggtgctgcagacagcgtggcaccctctccacactgaatcgtcctgagcactgtgacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtgctgcagacagcgtggcaccctctccacactgaatcgtcctgagcactgtgacat 440

                                                                       
Query: 241 -tngtgcttttctgtctgccattccctaacccacagttccgaacatcaccaccactgctg 299
            | | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ct-gaggttttctgtctgccattccctaacccacagttccgaacatcagcaccactgctg 499

                                               
Query: 300 ttcagagccacgtgctcttagcaagggtagaatggg 335
           ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcagagccacgtgctcttagcaagggtagaatggg 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)