Query= MSMg01no391_c01.b1 MSMg01no391_c01.b1 CHROMAT_FILE:
MSMg01no391_c01.b1 PHD_FILE: MSMg01no391_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:14 2005
(286 letters)
>mm_chr5_58718312_58718997
Length = 686
Score = 543 bits (281), Expect = e-159
Identities = 281/281 (100%)
Strand = Plus / Minus
Query: 6 ttagaccctaagctgttagaatacaaaattaacacacaaaaattcaatatatgaatgaca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttagaccctaagctgttagaatacaaaattaacacacaaaaattcaatatatgaatgaca 427
Query: 66 aactagaaacaaaacaaaagaacaaggaagcaaatcccctaaaaatagctaccttcaccg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aactagaaacaaaacaaaagaacaaggaagcaaatcccctaaaaatagctaccttcaccg 367
Query: 126 tcctccccacaaataacagcaaccaattctaaacaatgaaacaaatggcatctgtaatga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcctccccacaaataacagcaaccaattctaaacaatgaaacaaatggcatctgtaatga 307
Query: 186 aaagtttaagatattccaagaggaactggaaagacagcagcagtctaatcactcatgtga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaagtttaagatattccaagaggaactggaaagacagcagcagtctaatcactcatgtga 247
Query: 246 ccatttggtattggggaaaaaaatgcaataatgtaagcaat 286
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccatttggtattggggaaaaaaatgcaataatgtaagcaat 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no391_c01.g1 MSMg01no391_c01.g1 CHROMAT_FILE:
MSMg01no391_c01.g1 PHD_FILE: MSMg01no391_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:14 2005
(337 letters)
>mm_chr5_58527003_58527739
Length = 737
Score = 487 bits (252), Expect = e-142
Identities = 312/344 (90%), Gaps = 22/344 (6%)
Strand = Plus / Plus
Query: 1 acctgcatttacctcccaaattctgtgattaaattcttgtgtcactacagccaaactcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgcatttacctcccaaattctgtgattaaattcttgtgtcactacagccaaactcag 260
Query: 61 aaaattatttttactggacattgttcaacatacctgggaaggagtaatttgtctctcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaattatttttactggacattgttcaacatacctgggaaggagtaatttgtctctcaat 320
Query: 121 catgacaactctctctctctctctctctctct--------ggagggagggggagaattct 172
|||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 321 catgacaactctctctctctctctctctctctctctctctggaggg----ggagaattct 376
Query: 173 tacatacacacacacacacacacacatatatatatatatatatatatatacatacatata 232
|||| ||||||||||||||||||||| | | | | | ||||||||||||| ||||
Sbjct: 377 tacacacacacacacacacacacacacacacacacacatatatatatata------tata 430
Query: 233 tatgtatatatatatatgaatgactacccatgaccttgtgggttagaaaatgtatttttg 292
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tat----atatacatatgaatgactacccatgaccttgtgggttagaaaatgtatttttg 486
Query: 293 gtagaaattggctaaatagccaatgccctagtatttaaggactc 336
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 487 gtagaaattggctaaatagccaatggtctagtatttaaggactc 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
