BAC Information

Click to search

BAC

Clone NameMSMg01-391E05
Chromosome5 (Build37)
Map Location 132,091,350 - 132,091,594
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneCaln1, Wbscr17
Downstream gene4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E05.T7 (MSMg01no391_e05.b1)MSMg01-391E05.TJ (MSMg01no391_e05.g1)
ACCAG493078AG493079
length803777
length of high quality
(start - end)
249 (65 - 313)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no391_e05.b1 PHD_FILE: MSMg01no391_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:25 2005CHROMAT_FILE: MSMg01no391_e05.g1 PHD_FILE: MSMg01no391_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGCCGCTAAACGACTACTATAGTCAGACAATCCGCGGAATTCTTCAGT
TTTATTCACACCTTATATAATTATAGTGCACTTTTTATTTCTAGGGGGAA
CCATGGGGGTAGGAATTAAATAACCAATGTGATGGTTAAGAAACCCATTT
AATGGATAAGTAACCAGTAGGTTTAAATAAATATGGGTACCTTGCTGGAG
TAACAGAAGTAAAGCTGAATTCTCTGTAAAGGCTCTGTACCCTGCTGGGA
CAAGCTAGACTTTTGATTTGCAGCTAATTTGAGCCTCATAAAAAAAAAAA
ATCCAAATGATTATTATCAGGTAATCCAGAGATGCCCAGGGCTCTCAGGT
AGTATAATGAAGCAGGATGGGTGTTTTCCAGAATTCGCTGAGAATGAATC
TGGAACCACCCCGAGGGGCCGTTCAAGAGTGCGTTTTACCCTCCTAGAGT
TTCCCATCTTGAAAATCTGGGGCTTGCGCCTGCCCGCTCCGAGGCGTTGC
ATACCCCTCTGTCCGCCCGCTGTCCCACTACCGGATCTCTTACCACCGAT
CGCCATCACCCTTGTCCCGCCAGCTCCCCCGCCACTTCCACCACTGTTCC
CCGCTTTCTCTGGCCCCTACACCGCTTCCCCCCCCCCCTTTTCCCCCCCG
CCGTACCACCTTCTCTCCTTCTTTACTCCTCCCTCCCCCCCCCCTTTCCC
CTTTTTCTCCCCCCCCACCCCTATCTCCCCCCTCTCCCCTTTTCTTTTCC
CCTCCCCCTCCTTCTTCTCCTCCTCCCAACCTTATTGCCCCCCTTTTATT
ACC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCTGGAGCTCAC
TGATTAAGCTGTATTGGCTGGCCAAGACGTCCCAGGCATCCCCCTGTCTC
TGCCTCCCCAGCACTGGTATTACAAACACATGCCACCAGGCCTTGATTTC
TTTTTTGTTTCAGCTTGAGTTCTGGGGATTGAACATAGGTCCTCCTGTTT
GTACACTAGGCACGTTATTAGTAGATCCACCTCGCCAGCATCTCAGAGGT
TCTTAATGTATGTGGCCAGTGTCTTGTCACAGGAAGCTCAGGGAAGAGCC
AACCCATCCCTGGCTCCTTCCTGTCATTTCCAATCACCACACTGCCGCCA
CACAGGTCTCTCAGGTCCTGGCTCGGATCCTTTTCAGGCCCCATAGAAAG
GGACAAGCGAACGAACTCTGCGCCATTTCCCCCTAACCACAAATGGAACG
CCCCCTTCTGATAATCGACCGGTACTCATCCCCGAACGTTCTTCCCTGTC
CCCCCACCTACTCCTACTGGCCCCTTCCCCTGCCTTGCTGGCCCTGCACC
CCTTTCCGTTCATTTTTTATAAAAATCTTTTGGCCACCCCCCACTCTGCC
CCCTCCTTTTCGGGTCTCCTATATTCTTCCCCGTCCCCGCCCCTTCCCCA
TGTGCGCTCCCATTTAGCTCTCGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e05.b1 MSMg01no391_e05.b1 CHROMAT_FILE:
MSMg01no391_e05.b1 PHD_FILE: MSMg01no391_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:25 2005
         (249 letters)



>mm_chr5_132091150_132091797
          Length = 648

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataattatagtgcactttttatttctagggggaaccatgggggtaggaattaaataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atataattatagtgcactttttatttctagggggaaccatgggggtaggaattaaataac 386

                                                                       
Query: 61  caatgtgatggttaagaaacccatttaatggataagtaaccagtaggtttaaataaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatgtgatggttaagaaacccatttaatggataagtaaccagtaggtttaaataaatat 326

                                                                       
Query: 121 gggtaccttgctggagtaacagaagtaaagctgaattctctgtaaaggctctgtaccctg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 gggtaccttgctggagtaacagaagtagagctgaattctctgtaaaggctctgtaccctg 266

                                                                       
Query: 181 ctgggacaagctagacttttgatttgcagctaatttgagcctcataaaaaaaaaaaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 ctgggacaagctagacttttgatttgcagctaatttgagcctcat-aaaaaaaaaaatcc 207

                 
Query: 241 aaatga 246
           ||||||
Sbjct: 206 aaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)