BAC Information

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BAC

Clone NameMSMg01-391H04
Chromosome5 (Build37)
Map Location 110,800,562 - 110,800,803
singlet/doubletsinglet
Overlap gene2410025L10Rik
Upstream geneEG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679
Downstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391H04.T7 (MSMg01no391_h04.b1)MSMg01-391H04.TJ (MSMg01no391_h04.g1)
ACCAG493218AG493219
length742797
length of high quality
(start - end)
387 (59 - 445)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no391_h04.b1 PHD_FILE: MSMg01no391_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:40 2005CHROMAT_FILE: MSMg01no391_h04.g1 PHD_FILE: MSMg01no391_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
ACCAGTCTGGTCTACAGAGCGAATTCCAGGAAAGCCAGGGCTGCACAGAG
AAACTCTGTCCTGAAAACACAAAAATACAAGCAAGCAAACAAACAAAAGA
GTGCATGCTGCTCTTGCAGAGGATCTGAGTTCAGTTCCCAGCACCCACAC
TGGGCATTAGTAACCACCTATTCCTCTCTTGTCAGAGGATTAGACATTGG
TAGCCTCCTCAAGAACCCACATGCAGGTGTGCATACCTCCAAACAGACAC
ATACCTACCACTAAAAATAATAAAAATAAATTTAGAAAAAGGGTGGGGGA
ACATTTGATCACCTGTTCTCCTTTGTTCATTGCTGTATGGATGTGAGTAG
CANAGACAGATGCCACTTTCTGCATCTTCTCCAATGTTGCTCCTGGTCTG
TGGAGAGGGGAGAGTGGCCTCCGTTACCTCANGACCTGTCTCCCCCTTGC
TGGCTAAAGTGAAGCCAAAGGAACCACCTACGGGGGCACAGCTTCTTGTT
CCATGAAAAAATTACCCTAAGGGTTCCCATTTTTTATTTTAAAATTTTAA
AAGGAGACAACCGAACAACTTCCCTTTTGGAAACTGGGAAAAAACGCCCC
AGTGGCTAAAAAAGAACTTGGAAGTCTCTTCCCAAACAATTATATTTTGG
CCCCCTCACCCCCCGTGGCCAAAATAAACCCAACCCCCCGGG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACCTCGATCTAACTATATACC
TACACAATGATGTAGACGGGAAAGAATGGGAGATAAGAGGCTTCAAAAGT
AAACTGGGGTGTCCCACCTGTGACCCACCTCTAGAAGCAGGAAGTCCCAG
GTCTGGTAGCTCTGTCAACCTGGTTACTGTCCATCCAGGTGCCACCCATC
CAACTGTCAACCCATTCGGACCCTCAGCTCATCATGGCAGCTTCCTGCCC
ACTGGTCACCTGACAGGTATGTTGATCNTTAAGCCTAGGTGGTATCCTCC
ATGGGCTAGAGGGTCCCACAACCTTTCAGACCAGTATGGATGGCACCCGC
CCAGACTACAAGGTTCTGACCCACTCTTGTCACTTTGGGTCGCTGCTGGA
AGACTCGAATACTTCTGATCTCCTTCTCACCCTCATCCCTGTAGACCCTT
CTCCTAAATTCTGTACTTTCTGACGTCCTGCGGAGTCCGATCCCCCCCCT
GTCTTGCACCCTTTGTTTCCCCATGCTTCCTATTTACTTTCTGCTCCCCT
CCTCTTTTTTCTTTCCTTTCTCCTCCTTTTCTCCCTCCCGTTCTTTCTTT
TCTTCCCTCTTTCCTCTTCCCCTTTTTCTCTTTCCCCTTTATCTCTCCCC
CCCCTCTCACTTATCCTTCTTCTCCTCTTTTCACCCTTCCCTCCCCTTCC
TCTTTCTCTCCCCTTTTCCTTTCCTTTTTCCCCCTCTTCTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_h04.g1 MSMg01no391_h04.g1 CHROMAT_FILE:
MSMg01no391_h04.g1 PHD_FILE: MSMg01no391_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:40 2005
         (245 letters)



>mm_chr5_110800362_110801006
          Length = 645

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacctcgatctaactatatacctacacaatgatgtagacgggaaagaatgggagataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caacctcgatctaactatatacctacacaatgatgtagacgggaaagaatgggagataag 383

                                                                       
Query: 61  aggcttcaaaagtaaactggggtgtcccacctgtgacccacctctagaagcaggaagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggcttcaaaagtaaactggggtgtcccacctgtgacccacctctagaagcaggaagtcc 323

                                                                       
Query: 121 caggtctggtagctctgtcaacctggttactgtccatccaggtgccacccatccaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 322 caggtctggtagctctgtcaacctggttactgtccatccaggtgccacccatccaactgc 263

                                                                       
Query: 181 caacccattcggaccctcagctcatcatggcagcttcctgcccactggtcacctgacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caacccattcggaccctcagctcatcatggcagcttcctgcccactggtcacctgacagg 203

             
Query: 241 ta 242
           ||
Sbjct: 202 ta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)