Query= MSMg01no391_i02.b1 MSMg01no391_i02.b1 CHROMAT_FILE:
MSMg01no391_i02.b1 PHD_FILE: MSMg01no391_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:45 2005
(455 letters)
>mm_chr5_89528355_89529209
Length = 855
Score = 835 bits (432), Expect = 0.0
Identities = 447/452 (98%)
Strand = Plus / Minus
Query: 4 tttttgaaaccagtcatcctgataagcagctgggtttgaatttgacaattactgtgatat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tttttgaaaccagtcatcctgataagcagctgggtttgaatttgacaattactgtgatat 596
Query: 64 taccctagggatcaaaccataagaaaatgggcaatgtaagaattacaaagtaaagtaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 taccctagggatcaaaccataagaaaatgggcaatgtaagaattacaaagtaaagtaaac 536
Query: 124 tagcagagacagtaataaattcaaatagagggtaggtaaagctgcctttcaaagcttgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tagcagagacagtaataaattcaaatagagggtaggtaaagctgcctttcaaagcttgat 476
Query: 184 ctccctcacccccaatttcacacaattccatgtcacaccctcaaaagttggtccagatct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctccctcacccccaatttcacacaattccatgtcacaccctcaaaagttggtccagatct 416
Query: 244 gaaatgtgccctgtttgggtagcagagagccatgtcacctgtaaaagaacatctttgtgt 303
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaaatgtgccctgcataggtagcagagagccatgtcacctgtaaaagaacatctttgtgt 356
Query: 304 gctgacagctgttttccagtacatccttgaaacatattatcctttacttaaataaaaatg 363
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 355 gctgacagctgttttccagtacatccttgaaatatattatcctttatttaaataaaaatg 296
Query: 364 ctgtgaggatttctctaaattacaccagtcaactggttaatgatgttgatttagttttta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctgtgaggatttctctaaattacaccagtcaactggttaatgatgttgatttagttttta 236
Query: 424 taagaagaaaatatgtaaatagattttaacaa 455
||||||||||||||||||||||||||||||||
Sbjct: 235 taagaagaaaatatgtaaatagattttaacaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_i02.g1 MSMg01no391_i02.g1 CHROMAT_FILE:
MSMg01no391_i02.g1 PHD_FILE: MSMg01no391_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:45 2005
(246 letters)
>mm_chr5_89343064_89343708
Length = 645
Score = 387 bits (200), Expect = e-112
Identities = 230/244 (94%), Gaps = 8/244 (3%)
Strand = Plus / Plus
Query: 1 atttacctagcccaggccacccttgaacttgtgagaatcttcatgtcttatccctttgag 60
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atttacatagcccaggccatccttgaacttgtgagaatcttcatgtcttatccctttgag 267
Query: 61 tgttgagagcacaggcatgtgctatcgtacctgacctaactttaaacagttgtttctggg 120
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 268 tgttgagagcacaggcatgggctat-------gacctaactttaaacagttgtttctggg 320
Query: 121 ggctcttatgagtgtgtgcctttctgtgggtcacatgcgcgaaaaatcaagaaagagatc 180
||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ggctcttatgaatgcgtgcctttctgtgggtcacatg-gcgaaaaatcaagaaagagatc 379
Query: 181 tccctgcgtggacagagtctttgtgaagcctccattcatgtactggagatctggtcactg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccctgcatggacagagtctttgtgaagcctccattcatgtactggagatctggtcactg 439
Query: 241 gagg 244
||||
Sbjct: 440 gagg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
