BAC Information

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BAC

Clone NameMSMg01-391N02
Chromosome5 (Build37)
Map Location 120,877,492 - 121,048,601
singlet/doubletdoublet
Overlap geneLhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd
Upstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609
Downstream gene1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391N02.T7 (MSMg01no391_n02.b1)MSMg01-391N02.TJ (MSMg01no391_n02.g1)
ACCAG493500AG493501
length759756
length of high quality
(start - end)
249 (64 - 312)400 (81 - 480)
definitionCHROMAT_FILE: MSMg01no391_n02.b1 PHD_FILE: MSMg01no391_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:09 2005CHROMAT_FILE: MSMg01no391_n02.g1 PHD_FILE: MSMg01no391_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,877,492 - 120,877,737)(121,048,202 - 121,048,601)
sequence
GGGCGCTAAAAGAATNACTATATTTTCCAACACCGCGGAATTCTCATCCA
TTTGCCCCCCAACTCACTCTTCTCGGCCTGACCTTGACCCACACAGAACA
GCACCGGAGTGCACCCGGCTGGGCTTGGAAACCCAAGGTTTGTCGTTCCT
ATGGCAGAGACTAGAGACAGGGTCATCCTGAAGTACCAGGCGGGCGCTTC
ACTCCGGCCTGGTCTCCACGCCCGCTCCTACCCCGGGCCTATGCCTCTGG
GCGGCGGGCCGTGCGCGACGGGATGCTGAGTGTCTGTGCGCGGGGCCGCC
TATATTTACTTTTTTTTTAAAATAATTACACTCTTGTCGGAGGGAGAAAG
CCAGTGATTACGCGCAGGCTCTTTGCGGCAAAGCAGTTTCTCAGTGGTAT
ACCAGCCCCCCCCCTCACGGTTGGCTGACCTCCAAGAGGGGAAGTAATGA
ATCCGGAGAGCCCTTTACATTTACCATTCGTAACGCCGCCGCCGCTGCCG
TGCAGACCCCGGCCCGCGAGCGCATTTCTCAGCCGCCCGCTGCGCTTGCT
TCATGTCACCGCCTCCCCCGGCTTTCGCGCCGGCTCCGCCGCTCTTCCCC
CCCCCCTCCCTCTCTTCCCCCCCCCCCCTCCCCTCCTTTTCTTTCACCCC
CCCCCCCCCTTCCTCCCCCTTCCTTTGTCATTCCCCCCCCCCCCGCTCCC
CATTTCTCTCTCCCGCTTTGTTTTTCTCCTTCCCCCCTTTCTTTTTCTTC
TCCCCCCCC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCCTGCTCTACAG
AGTGAGTTCTAGGACAGCCAGCGCTACATCGAGAAACCCTGTCTCAAAAC
AAACAAAATAATTATTCACCAGGTGCTGTGGGGCTGGCCAGTAATGCCAA
CACATGGAAGAAAAGACAAGAAAGAAACGGGAGGGAGGGAGGAGGCTAGT
CCATTTTCCTGAAAATCAAATCAAGTCCTGAACTAGAGGCTCTCAGCACG
TGGGTCAAGACCCACCCCCCACGAATGTTTTATATATCAGATATCTTGCA
TATCAAGATAGTTACATTGTAGTTATGAGGTAGCAGTGAAATAATTTTAT
GGCTGGTGATCTGATCAGTAGCACATGACAAACTGTGTTAAAGGGTCAGG
GCTCTGTTCTGAAACAGAAAGGGCATCAGGGTAACATCTGGGACGTCACT
AAATCCAAGGTTTGGCTAACAGAACCGTATGGATAGTGACTTACATATTT
GCTTCCGTTTGACACACAATTTCATGTATACCAGCCTGGCCCACCACTTG
TTTTGTAGTATCTCCCGCCTCCCCCCCCCTCCCTGAGCATCCCCTTCTCG
TCCCCCCGCCGTCCCTCCTGGCCCCCCCCTGTTCCTTCCTTATTCCCATT
TCCCCCGCCTCCCCCTCGCCATCCTCCCCTTCCTCCCTTATCCCCCCCCT
TCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_n02.b1 MSMg01no391_n02.b1 CHROMAT_FILE:
MSMg01no391_n02.b1 PHD_FILE: MSMg01no391_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:09 2005
         (249 letters)



>mm_chr5_120877292_120877940
          Length = 649

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcttctcggcctgaccttgacccacacagaacagcaccggagtgcacccggctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcttctcggcctgaccttgacccacacagaacagcaccggagtgcacccggctggg 260

                                                                       
Query: 61  cttggaaacccaaggtttgtcgttcctatggcagagactagagacagggtcatcctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggaaacccaaggtttgtcgttcctatggcagagactagagacagggtcatcctgaag 320

                                                                       
Query: 121 taccaggcgggcgcttcactccggcctggtctccacgcccgctcctaccccgggcctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccaggcgggcgcttcactccggcctggtctccacgcccgctcctaccccgggcctatg 380

                                                                       
Query: 181 cctctgggcggcgggccgtgcgcgacgggatgctgagtgtctgtgcgcggggccgcctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctgggcggcgggccgtgcgcgacgggatgctgagtgtctgtgcgcggggccgcctat 440

                 
Query: 241 atttac 246
           ||||||
Sbjct: 441 atttac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_n02.g1 MSMg01no391_n02.g1 CHROMAT_FILE:
MSMg01no391_n02.g1 PHD_FILE: MSMg01no391_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:09 2005
         (400 letters)



>mm_chr5_121048077_121048876
          Length = 800

 Score =  696 bits (360), Expect = 0.0
 Identities = 390/400 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccagcctgctctacagagtgagttctaggacagccagcgctacatcgagaaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cagaccagcctgctctacagagtgagttctaggacagccagcgctacatcgagaaaccct 466

                                                                       
Query: 61  gtctcaaaacaaacaaaataattattcaccaggtgctgtggggctggccagtaatgccaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 465 gtctcaaaacaaacaaaataattactcaccaggtgctgtggggctggccggtaatgccaa 406

                                                                       
Query: 121 cacatggaagaaaagacaagaaagaaacgggagggagggaggaggctagtccattttcct 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 405 cacatggaagaaaagacaagaaagaaaagggagggagggaggaggctagtccattttcct 346

                                                                       
Query: 181 gaaaatcaaatcaagtcctgaactagaggctctcagcacgtgggtcaagacccacccccc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 345 gaaaatcaaatcaagtcctgaactagaggttctcagcacgtgggtcaagacccacccccc 286

                                                                       
Query: 241 acgaatgttttatatatcagatatcttgcatatcaagatagttacattgtagttatgagg 300
           |||||||  | | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 285 acgaatgggtcacatatcagatatcttgcatatcaagatagttacattgcagttatgagg 226

                                                                       
Query: 301 tagcagtgaaataattttatggctggtgatctgatcagtagcacatgacaaactgtgtta 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 225 tagcagtgaaataattttatggctggtgatctgatcagtagcacatgagaaactgtgtta 166

                                                   
Query: 361 aagggtcagggctctgttctgaaacagaaagggcatcagg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 aagggtcagggctctgttctgaaacagaaagggcatcagg 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)