BAC Information

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BAC

Clone NameMSMg01-392C24
Chromosome5 (Build37)
Map Location 30,115,510 - 30,115,638
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6
Downstream geneEG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392C24.T7 (MSMg01no392_c24.b1)MSMg01-392C24.TJ (MSMg01no392_c24.g1)
ACCAG493780AG493781
length814667
length of high quality
(start - end)
441 (48 - 488)129 (79 - 207)
definitionCHROMAT_FILE: MSMg01no392_c24.b1 PHD_FILE: MSMg01no392_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:38 2005CHROMAT_FILE: MSMg01no392_c24.g1 PHD_FILE: MSMg01no392_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGATGAATATTGAATGGCCTAGAAGCACCTCAGTTCTG
GAGAGATGGCTCAGTGGTTAAGAGCACTAACTGCACTTCCAAAGGTCCTG
AGTTCAAATCCCAGCAACTACATGGTGGCTCACAACCACCAGATCCCCTC
CTCTGGGGTGTCTAAAAACAGCTATAGTGTACTTATATATAATAAATAAA
TCTTAAAAAGAAATGTTCAGGGCTAGAGAGATGGCTCAGCAGTTAAGAGC
ACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAACCCAGCAACCTCATGGC
GGCTCACAACCATCTGTAAGGAGATCTGACGCCCTCTTCTGAAGTGTCTG
AAGACAACTACAGTGTACTTACATATAATAAATAAATAAATAAATCTTTT
TAAAAAAAAGGAAAAAGAAATGTTCAACATCCTTAGTCATGNNGAAATGC
AAATCAAAACAACCCTGGGATTCCACTTCACACCAGTCGGTATGGCTAAG
ATCAGAAACTTGGNTGACAGCAGATGCTGGCCAGGATATGGAGAAAGGGG
AACACCTCCTACATTGTTGGGATTATAAGCTTGGTACAGCCACTGGGGGA
AAACAACCCTGGCAGTTCCTCCAAAAATTGGGAAACACTGGTTCCCTGAG
GGCCCCGGTTTAACCCACCCCTGGGGAAATAACCAAAAAGGGGTCCCCAC
CTATTTAAAAGAACAACGGGCGCCCTCATTTCTCATAAAAGCCCTCATTT
ATAATATCCCCAAA
NCCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAAGGAAGATCATCTATCT
GGCTGTGGCTGTTGTAAGGTTTGCAGGTGTGTAGCCTATATCCCTGAGAA
TCCATCACAGCCCAAGCTATTTGAGGAAGACATTTAAGGCAAAGACAGGC
ACACAGACAGTCAGACAGTCTTTATTTAAGTGTTGGATTTTTTTTGTTTT
GGACAGGTGTGAATCTACTACCCGTCTTTCCTCCTCTTTCCTTCCCTTCT
TTCCTCTTTTCTCTCCCTCTCACTTTCCTCCTTTTCTTTTTTCCTCCTCT
CCCTCTCCCTTTCCTATATTCGGCCAGTCCTTTTTTTTTCCCCTTCCCCC
CCCTCTTCCAGGCGGGGGGCGTCTCTCTTCTCTACCTATCCTCCCTCCTT
ATTCTTTTCCTCCCCCCCCTCATCCTTTCTCCTCCCGTTTTTCTTTCTTC
CCCTTCTATTCCCTCCCCCGCCTCCTTTTATCCCCCTCCTCTTTTATTAC
GTCTCCGCTCCACCCCTCACCGTCTTTCCCGCTCCCCTGTCTCTTGTATC
CCACCTCTATCCACCTTTCTTGCTCCCTCCTTACCCCCTTTTCTCCCCCC
CTATTTCCCCCTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_c24.g1 MSMg01no392_c24.g1 CHROMAT_FILE:
MSMg01no392_c24.g1 PHD_FILE: MSMg01no392_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:38 2005
         (129 letters)



>mm_chr5_30115310_30115838
          Length = 529

 Score =  234 bits (121), Expect = 1e-66
 Identities = 127/129 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctaaggaagatcatctatctggctgtggctgttgtaaggtttgcaggtgtgtagccta 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcctaaggaagatcatctagctggctgtggctgttgtaaggtttgcaggtgtgtagccta 270

                                                                       
Query: 61  tatccctgagaatccatcacagcccaagctatttgaggaagacatttaaggcaaagacag 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 269 tatccctgagaatccatcacagcccaagctatttgagaaagacatttaaggcaaagacag 210

                    
Query: 121 gcacacaga 129
           |||||||||
Sbjct: 209 gcacacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)