GGGACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAATATTATCCTCACAGTAACTTAACAGTGCTCGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGGGCAGCAATGATTCTTTG
ATCACTGTAAATCTATTTTGAAAGAGTGTTTCTCACTGATTCAACTAGAT
TGGCAGTCCAGCCAATCTTTGAGAATTCTCCTGCCTCTGCTTCTTCAATT
CTAGGATCACAAAAGCATGCTAATGCATTGGCTGCTGCTGTAGGTTTTGG
AGATTTAACTCATCTTCCTGTTTCTATGACAACCACTTTACTGACTACCA
TTTTCCTAGGCATCTAAAAGGTAAATTTTTAATATCAAAATGAAGAGGGT
TATGGGTAGTAATTGAGTTTTCTATGTGGAAACAAAGGAACATATATATT
GTAATTCTCTGTTTAGACACCTACTTGATAGCTAAAGAATTTTCCTTAAT
AATCTGAGAGAAGATGATAGATACATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGCCCCCCCTCCTCTGCCTAAAGAGTCGGC
ATACATCCATCCCAAGGTCCGGACCCACCCTGATTATCTACCAACCCGTC
TCCTCACTTCCTTCCTTTTCTACCCCTCTTTTCCTACTTGGCCCTCCCAC
TTTCACCCTCCCCACCCGTCACCTTCCCTCCTCATCACCAGCCCCTCTCC
CCCCTGCCCTCCC

AACTGTTACCCTGGTGGCGCTGGCTTCCACTCTACGTGACCTATAGAAGA
TTTCCCAATTCGACTCAGCCGGGAGTGGTAGCACACACCTTTAATCCCAG
CACTTGAGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAGGCCCAGCCCCT
TTGTTTATCCCCTTCTCTCTCTTTTTTTTGTCCTTGCTTTTTCGTTCCTT
CTCGTCCACGACCCGCCCCTTTTGCTTTCCCCCCCCTAAGTAAATCCCTT
GCCCTTGTCACACCCCTATTTTCCTTCCCTTCCCCTCCCCTTCCACCCTT
TCTATCCACCCATACAATATCTCACCCCCCGCCATACTTGGCCCCCTTTT
TTTAATACGGTCTTTTTTTTTACCCCTTGTTTCCTCCCTCGTGAATCCCC
ACTCGGCCCCCTTTCCCCCCCCCTTTTTTCTCCTTCCCCCTTTTCCTCTC
CCGCTTTTTTCCTCCCCCCTATCCTCCTTTTTCCCTTCTTTCCTCCTGTT
TTTCCCCCTCCCTTTCTCCCTCTTTTTATTTTCTCCTTTCCCCCCCCCCC
CTTTTCTCTTTCCCTTTTTTTTTTCTTTTCTTCCCCTCCTTTCTTTCCCC
TTCTTCCCCCCCTTTCTTCCCTCTTCCCTCCCTCTTTCCCCCTCTCCCTC
TTTCCCTTTTTTTCTCCCCTTCCTCCTTTCTCCTCATCCCTTCTTCCCCC
T

Query= MSMg01no392_d08.b1 MSMg01no392_d08.b1 CHROMAT_FILE:
MSMg01no392_d08.b1 PHD_FILE: MSMg01no392_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:40 2005
         (522 letters)



>mm_chr5_10269877_10270798
          Length = 922

 Score =  835 bits (432), Expect = 0.0
 Identities = 469/486 (96%), Gaps = 9/486 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaatattatcctcacagtaacttaacagtgctcgtgtgtgtgtgtgtgtgtgt 64
           ||||||||||||  ||||||||||||||||||||||||||        ||||||||||||
Sbjct: 872 gaattctcaata-gatcctcacagtaacttaacagtgctc--------gtgtgtgtgtgt 822

                                                                       
Query: 65  gtgtgtgtgtgtgtaaagggcagcaatgattctttgatcactgtaaatctattttgaaag 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 821 gtgtgtgtgtgtgtaaagggcagcaatgattcttcgatcactgtaaatctattttgaaag 762

                                                                       
Query: 125 agtgtttctcactgattcaactagattggcagtccagccaatctttgagaattctcctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 761 agtgtttctcactgattcaactagattggcagtccagccaatctttgagaattctcctgt 702

                                                                       
Query: 185 ctctgcttcttcaattctaggatcacaaaagcatgctaatgcattggctgctgctgtagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctctgcttcttcaattctaggatcacaaaagcatgctaatgcattggctgctgctgtagg 642

                                                                       
Query: 245 ttttggagatttaactcatcttcctgtttctatgacaaccactttactgactaccatttt 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 641 ttttggagatttaactcatcttcctgtttccatgacaaccactttactgacgaccatttt 582

                                                                       
Query: 305 cctaggcatctaaaaggtaaatttttaatatcaaaatgaagagggttatgggtagtaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cctaggcatctaaaaggtaaatttttaatatcaaaatgaagagggttatgggtagtaatt 522

                                                                       
Query: 365 gagttttctatgtggaaacaaaggaacatatatattgtaattctctgtttagacacctac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 521 gagttttctatgtggaaacaaaggaacatatatattgtaattctctgtttagacacctat 462

                                                                       
Query: 425 ttgatagctaaagaattttccttaataatctgagagaagatgatagatacatagatagat 484
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 461 ttgatagctaaataattttccttaataatctgagagaagatgatagatagatagatagat 402

                 
Query: 485 agatag 490
           ||||||
Sbjct: 401 agatag 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)