BAC Information

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BAC

Clone NameMSMg01-392F19
Chromosome5 (Build37)
Map Location 15,195,757 - 15,196,241
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392F19.T7 (MSMg01no392_f19.b1)MSMg01-392F19.TJ (MSMg01no392_f19.g1)
ACCAG493914AG493915
length765753
length of high quality
(start - end)
485 (74 - 558)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no392_f19.b1 PHD_FILE: MSMg01no392_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:51 2005CHROMAT_FILE: MSMg01no392_f19.g1 PHD_FILE: MSMg01no392_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNGCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTCTGCTCATCACAAGCCGTCACTAACAGAGTGTGGGTG
GTGAGAACTAGTGCTTATTTGTTGATGAAGAAGTAAGAACATACATACAT
CAGGGACCACATTTTGAATGTGTTTTGTGGTACAGCCTAGGTTTTGGGTG
TTTATGAACAGTATACTTGAGGAAACCTTGGAATTGACAGCTTTATGTGC
TCTACATTAAAATATTACTTTTACATTTGCTACATTTACATGACGATGAA
TAAACCCCAGTGATTGCTTATTGTATTATAACACTGCTGTTAGTGTTAAC
CCACGTGACTGTCAGGATGTACACAGAGATGGTTGTAACTTAGCAACTTA
TCTTCAGCTATTTTTATAGACTGTCAAGACAACAGCCATGATAGTATTAT
ATTAGGACTGTCATGCTTTTAAATGTTAAAAAATGCTTGTATGTATAAAA
TATAAAATTGCAAAAGAGCAGTAACTCATTGAGATTGTTATAGATTANAC
TTTATTCATTTAAAAAGTAAACTTTAATTTTGTTAAGGAATTTAAACCAG
AACCCCATAAAAAGAAATAATATACCTATCTTTTTATACAAAACTTGTAA
TTTAAAGCATGCTATTTTTGTAATTTTACTAACCTCACAACCATATTTTA
AGAAATATTTAGTTACTCCAGATGGGAAAGCTTATCCCTTGAAGACAACC
CCACCCTCCTGGAGA
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTTTCCAAGACTTTTAACA
TGAAGGGGTGTTAAATTTTATCAAATTATTTCTCAGAATCTAATGAGATG
ATCATGTGTTTTTTGTTTTTCAGTGGATTTCTGTATGTTGAATTATCTCT
GCATTTCTTGGATGAAGCCTGCTTGATTGTGGTAAATGATCATTTTGATG
TGTTCTTGGATTTGGCTTGCAAGAATTTTATTGAGTTTTTTTTTTTGCAT
TGATATTCATAAGCAAAAACGTTTTTTTGTTCTCTTTCTTTGTTGAGTCT
TTGTGTGTTTAGGAATAACTGCAACTGTGCCTTCATAGACCAACTTGTCT
ACCCTTTCTTCCGCTTCTCCCTTGTGCCACACCTCGAAGCACACCCTCCC
CCATCTTCCCCTGCCCCCCTCTTCTTTCCCCTCCCCCCCCCCTCATGTCC
CTCCGCTCTCGTTTCGCCTCTCTTTCTCTCCATCCCCCCTCTCTCCTTCC
TCCCCCCCCTCTTCTTCCTCCCACCCTTTACCTTCTCCCCTCCTCTTCCC
CCCCCCCCCCCTCTTTTCCTCTTGCCTTCTCGTCGTTCTCTACCCCCCCT
CTTACCTCCTTCCCCCCCCCCCTTCTTTTGTTCCCCCCCCTTTCCTCCTT
TTCTGCTCCCATCGTTTTCCGCTTTTCCTCCCCGCCCTTTCTCCCCCTCT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_f19.b1 MSMg01no392_f19.b1 CHROMAT_FILE:
MSMg01no392_f19.b1 PHD_FILE: MSMg01no392_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:51 2005
         (485 letters)



>mm_chr5_15195557_15196441
          Length = 885

 Score =  832 bits (430), Expect = 0.0
 Identities = 471/485 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagccgtcactaacagagtgtgggtggtgagaactagtgcttatttgttgatgaagaag 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caagccgtcactaacagaatgtgggtggtgagaactagtgcttatttgttgatgaagaag 626

                                                                       
Query: 61  taagaacatacatacatcagggaccacattttgaatgtgttttgtggtacagcctaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taagaacatacatacatcagggaccacattttgaatgtgttttgtggtacagcctaggtt 566

                                                                       
Query: 121 ttgggtgtttatgaacagtatacttgaggaaaccttggaattgacagctttatgtgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 ttgggtgtttatgaacagtatacttgaggaaaccttggaattgacagctttatatgctct 506

                                                                       
Query: 181 acattaaaatattacttttacatttgctacatttacatgacgatgaataaaccccagtga 240
           |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 505 acattaaaatataacttttatatttgttacatttacatgacgatgaataaaccccaatga 446

                                                                       
Query: 241 ttgcttattgtattataacactgctgttagtgttaacccacgtgactgtcaggatgtaca 300
           ||||||| ||  |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgcttactgcgttataatactgttgttagtgttaacccacgtgactgtcaggatgtaca 386

                                                                       
Query: 301 cagagatggttgtaacttagcaacttatcttcagctatttttatagactgtcaagacaac 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 cagagatggtcgtaacttagcaacttatcttcagctatttttatagactgttaagacaac 326

                                                                       
Query: 361 agccatgatagtattatattaggactgtcatgcttttaaatgttaaaaaatgcttgtatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccatgatagtattatattaggactgtcatgcttttaaatgttaaaaaatgcttgtatg 266

                                                                       
Query: 421 tataaaatataaaattgcaaaagagcagtaactcattgagattgttatagattanacttt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 tataaaatataaaattgcaaaagagcagtaactcattgagattgttatagattaaacttt 206

                
Query: 481 attca 485
           |||||
Sbjct: 205 attca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)