Query= MSMg01no392_h15.b1 MSMg01no392_h15.b1 CHROMAT_FILE:
MSMg01no392_h15.b1 PHD_FILE: MSMg01no392_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:00 2005
(428 letters)
>mm_chr5_137428620_137429447
Length = 828
Score = 762 bits (394), Expect = 0.0
Identities = 419/434 (96%), Gaps = 12/434 (2%)
Strand = Plus / Plus
Query: 1 cggcaagcacctgtaccctctgagccatttcaggggtcggtaagaaacttttgcaaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggcaagcacctgtaccctctgagccatttcaggggtcggtaagaaacttttgcaaaatc 260
Query: 61 tgaggaaaggaaaaagtccctttccaacacccggtagcgccctgccctcctagtgtcgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggaaaggaaaaagtccctttccaacacccggtagcgccctgccctcctagtgtcgcc 320
Query: 121 ccgccccttggggagcagcgcgcgttcactggccagtgaggtcctctcgctccgcccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgccccttggggagcagcgcgcgttcactggccagtgaggtcctctcgctccgcccttg 380
Query: 181 gcctcgctcggccccgcctccctttggacagctcctgctgcgcagactctgctcttccca 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctcgctcggccccgcctccctttggacagctcctgctgcgcagactctgctcttccca 440
Query: 241 atgttattt------ctccggtcctccagagcaccgagccgacttcctagagacgccccc 294
||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 atg------gagcagctccggtcctccagagcaccgagccgacttcctagagacgtcccc 494
Query: 295 aaggaggcaccacccggaagttcaggcttcccagagggaccctagcgcgctttctgtaac 354
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 495 aaggaggcaccacccggaagttcaggcttcccagagggaccctagcgtgctttctgtaac 554
Query: 355 gcctgccgttactccttctaccccgaggctgtcctaagagggctctcctttgtcagaaaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gcctgccgttactccttctaccccgaggctgtcctaagagggctctcctttgtcagaaaa 614
Query: 415 gatgaatgaagcat 428
||||||||||||||
Sbjct: 615 gatgaatgaagcat 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_h15.g1 MSMg01no392_h15.g1 CHROMAT_FILE:
MSMg01no392_h15.g1 PHD_FILE: MSMg01no392_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:00 2005
(327 letters)
>mm_chr5_137606287_137607013
Length = 727
Score = 600 bits (310), Expect = e-176
Identities = 322/326 (98%)
Strand = Plus / Minus
Query: 1 tctctcatgaacctgctcatccacgaaacgggaggaagacctttcccctctttttctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tctctcatgaacctgctcatccacgaaacgggaggaagacctttcccctctttttctttt 658
Query: 61 catctgaaacagggtctcttgtagaccaggctgctcttccacttgagatgttgctgagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 catctgaaacagggtctcttgtagaccaggctgctcttccacttgagatgttgctgagga 598
Query: 121 taaccctgaacttctgatcttcctgcctctgccttctgagtgctgggattacaggcgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taaccctgaacttctgatcttcctgcctctgccttctgagtgctgggattacaggcgtgc 538
Query: 181 accaccacaccaagagacagactttcactgggctctcaactctacctcccatgatccatg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 537 accaccacaccaagagacggactttcactgggctctcaactctacctcccacgatccatg 478
Query: 241 ccgacagttttccctgtctgctctcatccacccagccacgcagacactggctggctccca 300
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 477 ccgacagctttccctgtctgctctcatccacccagccacgcagacactggccggctccca 418
Query: 301 cactcagcagccactggccacctggg 326
||||||||||||||||||||||||||
Sbjct: 417 cactcagcagccactggccacctggg 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
