BAC Information

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BAC

Clone NameMSMg01-392H20
Chromosome5 (Build37)
Map Location 88,295,903 - 88,296,325
singlet/doubletsinglet
Overlap genenone
Upstream geneUgt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494
Downstream geneOdam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H20.T7 (MSMg01no392_h20.b1)MSMg01-392H20.TJ (MSMg01no392_h20.g1)
ACCAG494012AG494013
length774831
length of high quality
(start - end)
425 (52 - 476)233 (72 - 304)
definitionCHROMAT_FILE: MSMg01no392_h20.b1 PHD_FILE: MSMg01no392_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:01 2005CHROMAT_FILE: MSMg01no392_h20.g1 PHD_FILE: MSMg01no392_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCCATTCTCAAATTTATTGTGTGCACTGTATAGTATACA
CTGGCCTCAAACTCTCATCACATTTCTTGACTCAACTCTTCTAAGTGTTG
GGAATTACATGCTACCTGCATTTTTCTTATATTGTAATTTTCCCTTTTTT
TATATAATTATATATTTCTGTAGAGGAAAAAAAAACAAGGTTTGAGGGTT
TGCAGAAAGTCATATAATCAAGAGAATTGCTATCCATTCAGCTTTCACCT
TTACACTCTTGCATTTAGTAGATAACAACTTGCCTTTAGTAGGTACAATT
TTGTTTTCTTTTTCTTTTTCTGGTTGCCATTGACTACTAAAACACATACT
GGCATATTGGTTGGAATAATATTAAATGAAAAGGCCAGTCTGAGGGGTGT
TTAGTCATGTATGATAAAGGTTATCAAAGGTCAGAAGTAGGAGACCATCA
TAAAGAGTTGAGTTGAGAATGCAATCAGAAATGCCTGCCTTTTACAGTGT
CAAAGTTCCCAGCATTGGCTAAATCAGGGCATCCTAGAGAGACCACATCT
ACCAACAACTAGTTTGGAAAATGACCTGACCCGGATGAACCGAAGGGCTT
ACAAACCCAATTATAAAAGGGGCCGGTTTCTAAGAAGGCCCTTTCCGAAA
CCAAAACGGTTTGCGCCCAGGGGGAACTCTTAATCAAAAAAGGGTTAAAA
AGCTTGTGCGCCCTCTCCACCAAN
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCAAATTTTTAAA
CAGGTTTGTTTGGTTTCTTGGAGTCCAGCTTCTTGAGTTTTATATATATA
TATATTGGATATTAGTTCCCTATCAGATTTAGGGTTGGTAAAGATTCTTT
CCCCATCTGTTGGTGGTCTTCTTGTCTTATTGACAGTGTCTTTTGCCTTA
CCGAAGCTTTGAAATTTTATGAGGTCCCATTTGTGTATTCTTGATCTTAC
CGCTCAAGCTACTGTTGTTATGTTCTGTACCTTTCCCCCTGTGCTGCCAT
TTTTGAGGCTTTCCCCCACTTTCTCCTCTATCATTTTCCCAGTTTCTGGT
TTTTTGCTCTTCTTCCTTGATCCTCCTACACCTGTCTTTTCCGTCCTCGC
TTACTTCTTCGTTTCCCATTTTTTTCCCCTCCTTTCCCCTTTTCTTTTTT
CCTGTTTACCTCCCCCTCCTGTCCCTTCACTTCCTGCAAGTTTCTCCCTT
CTCTATGCTNTTCCCTCCCCCCCTTTCTCTCTCTTTTTCTTCCTCCCCCC
TTCTTCTTTTTCTTCCCTCCCCTTTTTCCCTTGCTTTCCCCTTCTTTTTC
CCCTTCCCCCCTCTTTCTTTTCTTCACTCTCTCCCTTTCTTTTCCCTCTC
CCTCTCCGTCCTTCTCTCCTCCTTTTTGCCCTCCTGCTCTTGCTATTCTT
TTCCCCTATTCCTTTCTCTAATTTTCTTCTTCGCCTTCTTACCTCCCCTT
TTTCTCCCTCCCCTTTTTACCCCTTATTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h20.b1 MSMg01no392_h20.b1 CHROMAT_FILE:
MSMg01no392_h20.b1 PHD_FILE: MSMg01no392_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:01 2005
         (425 letters)



>mm_chr5_88295537_88296363
          Length = 827

 Score =  731 bits (378), Expect = 0.0
 Identities = 412/424 (97%), Gaps = 3/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccccattctcaaatttattgtgtgcactgtatagtatacactggcctcaaactc 63
           |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 789 ggaattccccatcctcaaacttattgtgtgcagtgtatagtatacactggcctcaaactc 730

                                                                       
Query: 64  tcatcacatttcttgactcaactcttctaagtgttgggaattacatgctacctgcatttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcatcacatttcttgactcaactcttctaagtgttgggaattacatgctacctgcatttt 670

                                                                       
Query: 124 tcttatattgtaattttccctttttttatataattatatatttctgtagaggaaaaaaaa 183
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcttatattgtaattttccc-ttttttatataattatatatttctgtagaggaaaaaaaa 611

                                                                       
Query: 184 acaaggtttgagggtttgcagaaagtcatataatcaagagaattgctatccattcagctt 243
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acaaggtttgagggttttcagaaagtcatataatcaagagaattgctatccattcagctt 551

                                                                       
Query: 244 tcacctttaca--ctcttgcatttagtagataacaacttgcctttagtaggtacaatttt 301
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcacctttacactctcttgcatttagtagataacaacttgcctttagtaggtacaatttt 491

                                                                       
Query: 302 gttttctttttctttttctggttgccattgactactaaaacacatactggcatattggtt 361
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gttttctttttctttgtctggttgccattgactactaaaacacatactggcatattggtt 431

                                                                       
Query: 362 ggaataatattaaatgaaaaggccagtctgaggggtgtttagtcatgtatgataaaggtt 421
           ||||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||||
Sbjct: 430 ggaataatattaaataaaaaggccagtttgaggggtgtttagtcatataagataaaggtt 371

               
Query: 422 atca 425
           ||||
Sbjct: 370 atca 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 827
Length adjustment: 9
Effective length of query: 416
Effective length of database: 818
Effective search space:   340288
Effective search space used:   340288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)