BAC Information

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BAC

Clone NameMSMg01-392K05
Chromosome5 (Build37)
Map Location 38,735,082 - 38,934,733
singlet/doubletdoublet
Overlap gene4930487D11Rik, Slc2a9, Wdr1
Upstream geneEvc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5
Downstream gene4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K05.T7 (MSMg01no392_k05.b1)MSMg01-392K05.TJ (MSMg01no392_k05.g1)
ACCAG494126AG494127
length776772
length of high quality
(start - end)
247 (79 - 325)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no392_k05.b1 PHD_FILE: MSMg01no392_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:13 2005CHROMAT_FILE: MSMg01no392_k05.g1 PHD_FILE: MSMg01no392_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,934,489 - 38,934,733)(38,735,082 - 38,735,325)
sequence
CCCCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAT
CCGCGGAATTCCTTGATTTCCTTCCCAGTGAAAGGCTTTAAAAATTAAAA
TATGTGAGGGTGAGGTTTATTATGTTTTGCTAGAGGAAATTTTTGTTTGT
TTGTTTAGTGTAAACCAAATAACAGCCCTTTGTCACTAGATCTTTCATTC
CTAACCTGTGACTGCTGGGAACTTGGTTGCCTTCACTTCTTTTCCTATCT
GTAGGCCAAATGGCCTGTGCTTACCACAACCTTATCCAAGTGAGCAGCCT
ACAGGCATTCTGTCCTTGAAGTCTTTTTCCACTCTCCCATCTACCTTTTA
CTTCACAGCTTATCTCTAGGCGAGAGAGCCAGAGCTTATAACAGACTGAG
AGGTAAGGTGAATAGTGGCCCTATGGGAGCTTTCCCAGGTACTGGGCAGG
AGGTCTCCATATGTGTCTGGGACAGGCCACAATTTAGGGGTGAGTTTAAC
ATGCTACCTCCAAACATACTTGTTGGGAATTTCCGTGCGCCATGCGCTAA
GACCAACCCTGTGATGTGCCCGTCCCCAAACGCAAATACCCAGCCTCAGA
CACCGATCACCATACCCGCACTACCCCAACCCGCATCCTACTTCTCCCGG
CCTAATTTTCACCATCCTACCCCCCCCCTCCTTCCCCACCCTGTCTCCAC
TTCTCTCCCCCCTCTCTCAATTCTACCTCATCTCCCCCTATACCCCCCAC
TCTTCCCATTTCCCTCCCCCCACCCG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCCCAACTCAATGAGAATAAGTCACAGCAGTCCTGAAACAT
CAAGGAAAACATCAGCAAGGAAACATGCAGGTATGAGACAGTCAACTGGA
AGAAGGTAACAAGGATGCAGAAAGCTCTGGAGTCAGGGATGCCCTGTCAC
ACCCATGAAGACTCGTGGGTGCTACCAATGTGAAGACAGGGAAGACAGTC
TTCACAGAGGGAATGTTAGATAAGCACTGCTATCTATGTCTTGATCCTAT
TCACCGGCCTCCCCATCTTTTGTCAGATCTCCCCACTTCACACCCAACTT
TGTGTATATTTCCCCCTTTTCTTCCAAACCAATTGTGCTACCCAAATATC
CCTTGATGTGTGTGTGGTCTTCCACTGGATGGTGGCTGATCTATTAAGGG
ATAGACTTCCTTTCTCATCCAGCAACTAAAAAACTGCCAATAGCACCTCA
GCTATGGGGGGTGCGGTGGTTTTTCCCTCTACTCCCCTGCCCTTGCCCCC
CACTTGTTTCTTCTTGTCCCCCTCCACTTACTTCCCCTTCTTCTTTCTTT
TCCCCCCTTCTCCCGCCTCCCCCCCCCTTTCCCTTGACCACCCCCCCCCC
CGTCACCCTCCTTTTTCCTTNCCCTACCTTCGCCCACCCCCACCCCTTTT
CTTTTCTCTTTTCCTCCTCCCAACTTTCCCCCCCCTCCCCACCCTCTTTC
TCCCTCCTTCTTTTTTCCGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k05.b1 MSMg01no392_k05.b1 CHROMAT_FILE:
MSMg01no392_k05.b1 PHD_FILE: MSMg01no392_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:13 2005
         (247 letters)



>mm_chr5_38934289_38934935
          Length = 647

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaggctttaaaaattaaaatatgtgagggtgaggtttattatgttttgctagaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaaaggctttaaaaattaaaatatgtgagggtgaggtttattatgttttgctagaggaa 386

                                                                       
Query: 61  atttttgtttgtttgtttagtgtaaaccaaataacagccctttgtcactagatctttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 atttttgtttgtttgtttagtgtaaaccaaataacagccctttgtcactaggtctttcat 326

                                                                       
Query: 121 tcctaacctgtgactgctgggaacttggttgccttcacttcttttcctatctgtaggcca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctaacctgtgaatgctgggaacttggttgccttcacttcttttcctatctgtaggcca 266

                                                                       
Query: 181 aatggcctgtgcttaccacaaccttatccaagtgagcagcctacaggcattctgtccttg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatggcctgtgcttaccagaaccttatccaagtgagcagcctacaggcattctgtccttg 206

                
Query: 241 aagtc 245
           |||||
Sbjct: 205 aagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no392_k05.g1 MSMg01no392_k05.g1 CHROMAT_FILE:
MSMg01no392_k05.g1 PHD_FILE: MSMg01no392_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:14 2005
         (245 letters)



>mm_chr5_38734882_38735526
          Length = 645

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaataagtcacagcagtcctgaaacatcaaggaaaacatcagcaaggaaacatgcagg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaataagtcacagcagtcctgaagcatcaaggaaaacatcagcaaggaaacatgcagg 260

                                                                       
Query: 61  tatgagacagtcaactggaagaaggtaacaaggatgcagaaagctctggagtcagggatg 120
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 261 tatgagacagtcaactggaagaaggtagcagggatgcagaaagctctggagtcagggatg 320

                                                                       
Query: 121 ccctgtcacacccatgaagactcgtgggtgctaccaatgtgaagacagggaagacagtct 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ccctgtcacacccatgaagactcgtgggtgctaccagtgtgaagacagggaagacagtct 380

                                                                       
Query: 181 tcacagagggaatgttagataagcactgctatctatgtcttgatcctattcaccggcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacagagggaatgttagataagcactgctatctatgtcttgatcctattcaccggcctc 440

               
Query: 241 ccca 244
           ||||
Sbjct: 441 ccca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)