BAC Information

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BAC

Clone NameMSMg01-392K14
Chromosome5 (Build37)
Map Location 24,456,585 - 24,456,922
singlet/doubletsinglet
Overlap genePrkag2
Upstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K14.T7 (MSMg01no392_k14.b1)MSMg01-392K14.TJ (MSMg01no392_k14.g1)
ACCAG494144AG494145
length755788
length of high quality
(start - end)
340 (77 - 416)170 (74 - 243)
definitionCHROMAT_FILE: MSMg01no392_k14.b1 PHD_FILE: MSMg01no392_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:15 2005CHROMAT_FILE: MSMg01no392_k14.g1 PHD_FILE: MSMg01no392_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAACAGGATC
CGCGGAATTCTACATTTGCGCATTAATGTATTTTGAAATTTACCCTGCCT
GTCCATTATTCTTTTATGAGCAGTTGGCCAGCCGTGTGTGTAAGCACATG
CCCACCCTGCCCTAGTTCTCCCTCTAGCTCTGTGCAGCTTCTACCAGAGC
TAGAGATAGGGCCTTGTCATCCTGAGCAGACTGCTGCCTACAGAGTAAGG
CTCCCTCCCTTTCTCTCTGTTTCCACATCTGTCTGTCTGTCCATCTTTGC
AAGAAGCTCTCTACTCACATTATTCTCCTAGAGGAGGCCCAGTCACCGTT
GGGTGAATGACCTCACTGACAGGGAACACACAACCTGCTGGTTCTTTGGT
TGGCCCAATGATCATCACCACAGTGCAAACCGCTGGAAGAAAACAAAGGC
AGCTTGCTCAAGAGGGTGCACAAAGGCACAAACCATCAACTTCTCTCATA
AGCCTGATTGCGTGTAGGTGGTTTGTGTATCGGAGGCCAGGAGAGGACGC
TGGAGGCTGTGTGTGTGTGTGTGCGCGCCGGCGCGCTTCTTCCCCCCCTC
CCATATTATCTCCCCCCCCCTTACCCCCCCCCCGCACTAACCCCCCCTTT
TCTTCCCCCCCTCTATCTCCCTCTTTTTCCCTTCTCCCCCTTACCCCCTT
TTCTCCTCCCCCCCCCCCCCTTCCTTCCTTTCTCCCCCCCCCTCCCCCCC
CCCCG
GATCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCGACAATTCTGCAGAAAGATGAATCCTGTTTTCTTTTCTT
TTTGCATCCATTCTGTTAGTAATGTCTTTTTATTGGGGAATTTAGACTAT
TAATGTTGAAAAATAAAAGTGAGCAGTGTTTGTTAATTCTTGTTATTTTG
TTGTTGAGCTGCTTCTGCTGGTAGTGCTGGTAGTAATTGTGTGCGTGTTC
TTTTTATTGGGCAGCTATAGCCACGAACAGCTATTTTATACTATATTATT
TTACATCTTTCATTATTTCCTGATTCTTTAGAGCAAAGCCCAGCTCACCT
CATCTCTTTTTTGTCCTCTCCCTTTTTCCCGACCCTTTCTCACTTTTCTA
CATCCATCCCCCCCAAATCCCCCTAGATCCATGTATTTTATGATACCCTC
AATTCCCTACTTAGTCAAAGATTATCCTCTGTTCCTTGTGGCGCGCTTCC
CTGCTTATGCTTTCGTTCCCTACCAGTTTCCTCCTTCCCTCCCTCCCACT
ACCCCTCCTCCCCTCCTTTTCCCCCCCCCCCCTCTGTTCGTCCCTCCCTT
CGCTTCCTCCCCCTCTCTTCCCCTTCTCTTTTTGTCTTCTTCTCCCTCTT
CTTCCCGCTCCTTCCCCTTCCCCCTCTTTCCTCCTCTTCCTCCCTCATCC
CCCCCCCCCTCTCTCTCTCTTTCCCCTCTTCTTTCTTCCCCCTTTTTTTC
CCTTCCCCTCTCTCCCTTCCTTTTCCTTTCTCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k14.b1 MSMg01no392_k14.b1 CHROMAT_FILE:
MSMg01no392_k14.b1 PHD_FILE: MSMg01no392_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:15 2005
         (340 letters)



>mm_chr5_24456385_24457122
          Length = 738

 Score =  630 bits (326), Expect = 0.0
 Identities = 336/340 (98%), Gaps = 2/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtattttgaaatttaccctgcctgtccattattcttttatgagcagttggccagccgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtattttgaaatttaccctgcctgtccattattcttttatgagcagttggccagccgtg 260

                                                                       
Query: 61  tgtgtaagcacatgcccaccctgccctagttctccctctagctctgtgcagcttctacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtaagcacatgcccaccctgccctagttctccctctagctctgtgcagcttctacca 320

                                                                       
Query: 121 gagctagagatagggccttgtcatcctgagcagactgctgcctacagagtaaggctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctagagatagggccttgtcatcctgagcagactgctgcctacagagtaaggctccct 380

                                                                       
Query: 181 ccctttctctctgtttccacatctgtctgtctgtccatctttgcaagaagctctctactc 240
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctttctct--gtttccacatctgtctgtctgtccatctttgcaagaagctctctactc 438

                                                                       
Query: 241 acattattctcctagaggaggcccagtcaccgttgggtgaatgacctcactgacagggaa 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acaccattctcctagaggaggcccagtcaccgttgggtgaatgacctcactgacagggaa 498

                                                   
Query: 301 cacacaacctgctggttctttggttggcccaatgatcatc 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cacacaacctgctggttctttggttggcccaatgatcatc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 738
Length adjustment: 9
Effective length of query: 331
Effective length of database: 729
Effective search space:   241299
Effective search space used:   241299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)