BAC Information

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BAC

Clone NameMSMg01-392K24
Chromosome5 (Build37)
Map Location 46,218,216 - 46,218,633
singlet/doubletsinglet
Overlap geneLcorl
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K24.T7 (MSMg01no392_k24.b1)MSMg01-392K24.TJ (MSMg01no392_k24.g1)
ACCAG494164AG494165
length830746
length of high quality
(start - end)
---415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no392_k24.b1 PHD_FILE: MSMg01no392_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:18 2005CHROMAT_FILE: MSMg01no392_k24.g1 PHD_FILE: MSMg01no392_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGAATC
CGCGGAATTCAAGTGAATACCGCATTGGTTGATTGGGGGTGGGGGGCGGT
CNCTACCCATTNATNNCCCCTTTTCCCCCCTCTCCACCATTTCCCTCTAT
ACCTTCCTTCACCTCCCTTTCTTATAGCAGACCGGTCCCATCTTTACAAT
CCTACTATTCCCCCCTAACCCACACCCTCCAACACCAAAAAAACACCCCC
AATCACCATTATTTTTTTTTACCCCCTCTCAATCACCAAAACCTATTTTT
ACCACTACCAAACACCCCCCCACCTCTTTCATAACTTCACTATTCACCTC
CCCATCCACCACACCATTTTTTCCTCCCCCCCCAACAACCAACTCCCCCC
ACCCCCCATTCTTATTTACACCCCCCCCCCCCCCCACCCCCTCCCATTTA
ATACCAACAACACACCAAATCTCCTTATACCTCTTCCGCAAAACCCCTAC
CCCCCTATTTCCCATACTCCTTACCCAATCCTTCCTTATTCCCCACCCCA
CAAATCACACAACCCCCAATATTTCCCCCCATCCTCCCACTAACTCATTC
CCTTATCCCTCTCTTCTCCCCCCCTTCACCCCTTATACCCCCCCCTTACC
TACTCCTCATCCCCCCACTTTTTTACACACCACCCTCCTTTTTTTCCCCC
CCATCAACACACCCCCCCATTTTTACCTCCTACCATCTCTCCCTTCTTCA
CCCCCTATCTCCCATTTTATNCCCCTCCCACTAACCCACTTTCAATCTTC
CTCAAACCCCACCTCTCCACCCCCCATTCG
NACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGTACACTGGCCTTTGTTGT
GTAAACCTTGATCCCCAACTTAAAGTTATTGGTTAATAAAAGGCTAGAAC
CTGTGACTGGCCAGTAGAGAGAGAATGGCAGGACCTGAGAATCGAGTGAG
GGGTCTCAGGAGAGAGCACAGATCTTGAAGAAAGGAAGGAGAAAGAAGAT
GAAAGAGCAGGAGGTCTCCATTAGACAGGAGGATGGATCAGGAGCACATG
GCCTAGAGAAATGCACCCTGAAGATTGTCTGATGGAACAAAAGCAGCAGG
AGCAACAAGACTCAAAAAGAAAGTAGCAAGGAAAATATGGAGTGGATACG
TAAAGATAGTATATAACTTGCCCAATCTAGGCTTGCAGTTTATAAATAAA
ATACTATATTATTTTTCTTTTATAGGGCCTAGCTAGAATAGAATATTTCA
CTTACATCTAGAAATTCATCCCTTTCTTTTAGTTTTATAGNGCAGGGGAT
TATAAATTCTTAAAGGCTGACCTTATGAATGTTTGCCCCGTCCGGCCCTG
TTTCCTGGCTTTTTTCCTCCCCCCAATTATAAATTTGCCCTCCCTTTCTT
GGGGTAATTTTCCAGCGCTTTCCCCCCCCCTTTTCTTTTCCCTCCCTTTC
CATTTCCACACCACCCACCTCCTTTTCCGCCCCTTTTACCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k24.g1 MSMg01no392_k24.g1 CHROMAT_FILE:
MSMg01no392_k24.g1 PHD_FILE: MSMg01no392_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:18 2005
         (415 letters)



>mm_chr5_46218019_46218833
          Length = 815

 Score =  762 bits (394), Expect = 0.0
 Identities = 411/418 (98%), Gaps = 3/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgtacactggcctttgttgtgtaaaccttgatccccaacttaaagttattggttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcatgtacactggcctttgttgtgtaaaccttgatccccaacttaaagttattggttaat 257

                                                                       
Query: 61  aaaaggctagaacctgtgactggccagtagagagagaatggcaggacctgagaatcgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaaggctagaacctgtgactggccagtagagagagaatggcaggacctgagaatcgagt 317

                                                                       
Query: 121 gaggggtctcaggagagagcacagatcttgaagaaaggaag---gagaaagaagatgaaa 177
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 318 gaggggtctcaggagagagcacagatcttgaagaaaggaagaaggagaaagaagatgaaa 377

                                                                       
Query: 178 gagcaggaggtctccattagacaggaggatggatcaggagcacatggcctagagaaatgc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagcaggaggtctccattagacaggaggatggatcaggagcacatggcctagagaaatgc 437

                                                                       
Query: 238 accctgaagattgtctgatggaacaaaagcagcaggagcaacaagactcaaaaagaaagt 297
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 accctgaagacagactgatggaacaaaagcagcaggagcaacaagactcaaaaagaaagt 497

                                                                       
Query: 298 agcaaggaaaatatggagtggatacgtaaagatagtatataacttgcccaatctaggctt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agcaaggaaaatatggagtggatacgtaaagatagtatataacttgcccaatctaggctt 557

                                                                     
Query: 358 gcagtttataaataaaatactatattatttttcttttatagggcctagctagaataga 415
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 gcagtttataaataaaatactagattatttttcttttatagggcctagctagaataga 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)