Query= MSMg01no392_m23.b1 MSMg01no392_m23.b1 CHROMAT_FILE:
MSMg01no392_m23.b1 PHD_FILE: MSMg01no392_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:28 2005
(162 letters)
>mm_chr5_144245736_144246297
Length = 562
Score = 279 bits (144), Expect = 8e-80
Identities = 156/162 (96%), Gaps = 4/162 (2%)
Strand = Plus / Minus
Query: 1 acactctgtggaccacagagtctgaaaacagttgcacgccaccagtagcggttacagagg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acactctgtgaaccacagagtctgaaaacagttgcacgccaccagtagcggttacagagg 276
Query: 61 ttaaccacacaaaagaggttagagagcaactaagtaatgctaaccacagactttcaagcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttaaccacacaaaagaggttagagagcaactaagtaatgctaaccacagactttcaagcg 216
Query: 121 ggtaggtaagctttctgtgtgtgtgtgtgngngtgtgtgtgt 162
|||||| |||||||||||||||||||||| |||||||||
Sbjct: 215 ggtaggcaagctttctgtgtgtgtgtgtg----tgtgtgtgt 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space: 85316
Effective search space used: 85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no392_m23.g1 MSMg01no392_m23.g1 CHROMAT_FILE:
MSMg01no392_m23.g1 PHD_FILE: MSMg01no392_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:28 2005
(330 letters)
>mm_chr5_144065641_144066370
Length = 730
Score = 555 bits (287), Expect = e-162
Identities = 323/339 (95%), Gaps = 11/339 (3%)
Strand = Plus / Plus
Query: 1 gcctggcctacatggccagacaccctccctctctctatatatagataaaataaata---- 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcctggcctacatggccagacaccctccctctctctatatatagataaaataaataagag 253
Query: 57 --agaaag--agaaagaaagaaagaaagaaagcaagaaagaaagaaagaaagaaagaaag 112
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 254 agagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 313
Query: 113 aaagaaagaaagaaagaaagaaagagagagagaaagaaaggaagagaaacagga-agaga 171
||||||||||||||||||||||||| ||||||| ||||| ||||||||||| || |||||
Sbjct: 314 aaagaaagaaagaaagaaagaaagaaagagagagagaaa-gaagagaaaca-gagagaga 371
Query: 172 aaaagtcaaagtccactgagcaccgcagagcccatagcctgccagagttagcagaaattt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaaagtcaaagtccactgagcaccgcagagcccatagcctgccagagttagcagaaattt 431
Query: 232 gcagtctggtggggaagttagaactcagtgttcgcagcgagatgccatggtctggtaggc 291
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 432 gcagtctggtggggaagttagaactcagtgttcgcagtgagatgccatggtctggtaggc 491
Query: 292 agaggaaaaggagcagtgagccctgaatggcgctccagc 330
||||||||||||||||||||||||||| |||||||||||
Sbjct: 492 agaggaaaaggagcagtgagccctgaacggcgctccagc 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
