BAC Information

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BAC

Clone NameMSMg01-392O20
Chromosome5 (Build37)
Map Location 59,989,183 - 60,170,010
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392O20.T7 (MSMg01no392_o20.b1)MSMg01-392O20.TJ (MSMg01no392_o20.g1)
ACCAG494347AG494348
length785821
length of high quality
(start - end)		396 (50 - 445)311 (81 - 391)
definitionCHROMAT_FILE: MSMg01no392_o20.b1 PHD_FILE: MSMg01no392_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:38 2005CHROMAT_FILE: MSMg01no392_o20.g1 PHD_FILE: MSMg01no392_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,989,183 - 59,989,574)(60,169,700 - 60,170,010)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAATTTATCAATGAATAATAAACTACCAAACTTCATTTTA
TTTAATTAAACTGAAATGATAGGTGTCCAGGGAATAATGCTAATTGCTGT
GAAAATTATTACTGAACAATATTTGATACGAAAATTCCTCATGTAAAATC
AACAACATTATTCAAGTCATCCTTAAAAAATGAAATCATAGCCAGTAATA
CCTTTCTGCAAATCTCTTCAGAATACTGTAATAACAACCATTTTGTAGCA
GCACATGAGACCTTAAAGTAACTATATTCTACGTCAGTTATTACAATTTT
TGTATAATCAATACCTCTCAGAATCATGAAACTGCAATGACCATTGAGTA
ATTTCTTGGTTTGATCACACATCACATGGAGGGTCACTATAACCTTCATT
AAAGGTAAATTATGGGAAACGAANAAAAATCTTCTCAATACCAAAGAAGG
CATTGGAGACATGTAATTCTCTTTCCCAAAACTCCATCCTGAGAGGCTGT
GTCAAAATAACCCTTCCGAAGAGCATGCATGCTATTTTTGTAATGACTTT
TAACCTCCTTTCCTGCCTTATTTTGAAAAATAATTAACCTGACCCCCATA
AGAACCCCAAAAAAGGCCCTAAATTGGTAACCCAACACTAAATTCCCCTC
CTAAAAAAAACCCCCCCCACCTAGTTTCCTCTAAAACACAAGGTGTTAAT
TTTCATGCTTTTAACCCCGCCCCCCCCCCCATATN

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCAGGGCTATGCAGAAAAA
CCCTGTCTCGAAAAACCACAAAAAGAAAAAGGGAAAATAGAAAAAGAAAA
AGAAAGAAAGAAATACTTTAAGTGGGACTTGCCTACATCTTCAGAGATTT
TGTTCTTCACAGTTGTGGTGGGGAGCATGATGGTAGCAGGCTGCCTGACA
TGGTCCTGGAATAGGAGCTAAGAGTATGTTTCTTTTTACTTTAATTTTTG
AACAGCCAATTTTCTGTTTATTTTTGTGCCCCACTTTGCAGAACAATCAA
AACTGAGTGAACTACCGCTCTCAGCAACTTCCCAGTTGTAACAGTGTGTT
TGTGGATGCATATCTCTGCGACCTATTGTCGCAGAACACTCATAGGCACC
TTGCTCATGTCTGGCTTGCCCCCTGTACCCGCAATACCCATCTGTTGTGC
CGGCTTCCGACCCCGGCCTTCCCAATCCCCTCAACATTGAGAGAATCGAA
TTAAATCTCCCTGGCGCCCTTTCTCGCCTTTATGTCCTCCCCCCTCTTTC
TTTTTCTCCCTCCCCTTTTTCCTTTACTTCTTCTCCCTATTTCCCCTCCC
CCGCCCCCCTATTTTCGCTCTCCCCCTTCCTCTACCCTACTCTACCCCTC
CACCTTCACCGTCTTTTCCGCCCACCCCCTTGGTGTCTTTATACCATACT
CTACTACCCATTTATAGCCTCCCATCAATACCCCCTCCTTTATCCCCCCC
CCTTTTAAACCCCATTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_o20.b1 MSMg01no392_o20.b1 CHROMAT_FILE:
MSMg01no392_o20.b1 PHD_FILE: MSMg01no392_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:38 2005
         (396 letters)



>mm_chr5_59988979_59989774
          Length = 796

 Score =  727 bits (376), Expect = 0.0
 Identities = 388/392 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaatttatcaatgaataataaactaccaaacttcattttatttaattaaactg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaatttataaatgaataataaactaccaaacttcattttatttaattaaactg 264

                                                                       
Query: 65  aaatgataggtgtccagggaataatgctaattgctgtgaaaattattactgaacaatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatgataggtgtccagggaataatgctaattgctgtgaaaattattactgaacaatatt 324

                                                                       
Query: 125 tgatacgaaaattcctcatgtaaaatcaacaacattattcaagtcatccttaaaaaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatacgaaaattcctcatgtaaaatcaacaacattattcaagtcatccttaaaaaatga 384

                                                                       
Query: 185 aatcatagccagtaatacctttctgcaaatctcttcagaatactgtaataacaaccattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcatagccagtaatacctttctgcaaatctcttcagaatactgtaataacaaccattt 444

                                                                       
Query: 245 tgtagcagcacatgagaccttaaagtaactatattctacgtcagttattacaatttttgt 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtagcagcacatgggaccttaaagtaactatattctacgtcagttattacaatttttgt 504

                                                                       
Query: 305 ataatcaatacctctcagaatcatgaaactgcaatgaccattgagtaatttcttggtttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataatcaatacctctcagaatcatgaaactgcaatgaccattgagtaatttcttggtttg 564

                                           
Query: 365 atcacacatcacatggagggtcactataacct 396
           |||| |||||| ||||||||||||||||||||
Sbjct: 565 atcagacatcagatggagggtcactataacct 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_o20.g1 MSMg01no392_o20.g1 CHROMAT_FILE:
MSMg01no392_o20.g1 PHD_FILE: MSMg01no392_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:38 2005
         (311 letters)



>mm_chr5_60169304_60170014
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccagggctatgcagaaaaaccctgtctcgaaaaaccacaaaaagaaaaagggaaaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gccagggctatgcagaaaaaccctgtctcgaaaaaccacaaaaagaaaaagggaaaatag 648

                                                                       
Query: 61  aaaaagaaaaagaaagaaagaaatactttaagtgggacttgcctacatcttcagagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaaaagaaaaagaaagaaagaaatactttaagtgggacttgcctacatcttcagagattt 588

                                                                       
Query: 121 tgttcttcacagttgtggtggggagcatgatggtagcaggctgcctgacatggtcctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgttcttcacagttgtggtggggagcatgatggtagcaggctgcctgacatggtcctgga 528

                                                                       
Query: 181 ataggagctaagagtatgtttctttttactttaatttttgaacagccaattttctgttta 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ataggagctaagagtttgtttctttttactttaatttttgaacagccaattttctgttta 468

                                                                       
Query: 241 tttttgtgccccactttgcagaacaatcaaaactgagtgaactaccgctctcagcaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tttttgtgccccactttgcagaacaatcaaaactgagtgaactaccgctctcagcaactt 408

                      
Query: 301 cccagttgtaa 311
           |||||||||||
Sbjct: 407 cccagttgtaa 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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