Query= MSMg01no393_b23.b1 MSMg01no393_b23.b1 CHROMAT_FILE:
MSMg01no393_b23.b1 PHD_FILE: MSMg01no393_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:55 2005
(543 letters)
>mm_chr5_18521224_18522166
Length = 943
Score = 942 bits (487), Expect = 0.0
Identities = 535/569 (94%), Gaps = 30/569 (5%)
Strand = Plus / Plus
Query: 5 gaattcatagcatctagcaaatagtttgaaaggggaaacaaaatattcaaaaaaggcctt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagcatcaagcaaatagtttgaaaggggaaacaaaatattcaaaaaaggcctt 264
Query: 65 tattctttatgtgattgctttcacatcatggaaactgataaaaacctatgttgtgttctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattctttatgtgattgctttcacatcatggaaactgataaaaacctatgttgtgttctt 324
Query: 125 ttctcctgtgcttgctcttgagttaaccatttcttctggatagtccatgtggagatttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctcctgtgcttgctcttgagttaaccatttcttctggatagtccatgtggagatttga 384
Query: 185 agaggtttgaccccaacaaattcatgtactttaatacctagccataggcagtgacactat 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataggtttgaccccaacaaattcatgtactttaatacctagccataggcagtgacactat 444
Query: 245 taagaggtgtgaccattttggagtaggtgtggccttgttgaaagaagtg--------tgg 296
||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 taagaggtgtggccattttggagtaggtgtggccttgttgaaagaagtgcatcactgtgg 504
Query: 297 gtgggctttgagttctgctatggtcatgcctgtctgcctgcagaagactatcaccttctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgggctttgagttctgctatggtcatgcctgtctgcctgcagaagactatcaccttctg 564
Query: 357 ctgcctgctaatcaagatttagaactcctggctcctccgtcgctatgtctgcctgtacac 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 ctgcctgctaatcaagatttagaactcctggctcctccgttgctatgtctgcctgtacac 624
Query: 417 tgctatacctccctccctccatgatgatattggactgaacctctgaaactataatccagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctatacctccctccctccatgatgatattggactgaacctctgaaactataatccagc 684
Query: 477 cccaagtaagaggtttttttttttt---------------------tttttttttttttt 515
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 cccaagtaagaggttttttttttttgtttttttttgtttttgtttttttttttttttttt 744
Query: 516 tta-gagttcccttagtcattatgtctct 543
||| |||||||||||||||||||||||||
Sbjct: 745 ttaagagttcccttagtcattatgtctct 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_b23.g1 MSMg01no393_b23.g1 CHROMAT_FILE:
MSMg01no393_b23.g1 PHD_FILE: MSMg01no393_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:55 2005
(452 letters)
>mm_chr5_18687442_18688293
Length = 852
Score = 812 bits (420), Expect = 0.0
Identities = 444/452 (98%)
Strand = Plus / Minus
Query: 1 ctcaggactctgagggcaatgatgtgcatgtgcctttgtccctgcttccactgaccacga 60
|||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
Sbjct: 652 ctcaggactctgagggcaatgatgtggatgtgcctttgtccctgcctccactaaccacaa 593
Query: 61 tggaaggatcagtttaatcactttgcagatatcagtgtctttattaggaagcttttagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tggaaggatcagtttaatcactttgcagatatcagtgtctttattaggaagcttttagga 533
Query: 121 tacttaaccatgactccatattcagaaccatttcacaatcagtccatttaaagtcaagtt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tatttaaccatgactccatattcagaaccatttcacaatcagtccatttaaagtcaagtt 473
Query: 181 ccatacaaatgccgcaaacttttctttgggtcttaggattgggcagtaagaagatttcct 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccatacaaatgcagcaaacttttctttgggtcttaggattgggcagtaagaagatttcct 413
Query: 241 gctgcgttgatatgtcttgctctcacctctgagactgactgggcagtctgtcttttcctg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 412 gctgcgttgatatgtcttgctctcacctctgagactgactgggaagtctgtcttttcctg 353
Query: 301 tagcttgcctatagaatctccttaagtggtcaaggcatgatgacccttatgttggcttct 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 352 tagcttgcctatagaatctccttaagtggtcagggcatgatgacccttatgttggcttct 293
Query: 361 tgttctaatttgctactttgtagcacatttatgtctagcacacatcttgacaattttagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgttctaatttgctactttgtagcacatttatgtctagcacacatcttgacaattttagg 233
Query: 421 gactcatgaaatttccctttttatattcatgt 452
||||||||||||||||||||||||||||||||
Sbjct: 232 gactcatgaaatttccctttttatattcatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
