BAC Information

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BAC

Clone NameMSMg01-393K06
Chromosome5 (Build37)
Map Location 23,589,977 - 23,590,523
singlet/doubletsinglet
Overlap genenone
Upstream geneLhfpl3, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317
Downstream geneKlhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393K06.T7 (MSMg01no393_k06.b1)MSMg01-393K06.TJ (MSMg01no393_k06.g1)
ACCAG494887AG494888
length7771,239
length of high quality
(start - end)		550 (33 - 582)---
definitionCHROMAT_FILE: MSMg01no393_k06.b1 PHD_FILE: MSMg01no393_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:39 2005CHROMAT_FILE: MSMg01no393_k06.g1 PHD_FILE: MSMg01no393_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGTTAT
CCTTGGTTATGTAGAGAATCTTAGGTTGGCTGGACAGTGGTGGCACAAGC
TTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTAAATTCAA
GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGA
GAAACACAAGCCTCTTCCCTTCCAGCTTCCGACTCGGACCCTGCAGCTGC
CTTGATGTTGATGCCTAAGAAGAACCAGATTGCCACCTAGCAACTTCTTT
TTGAGGAAGGAGTGGTTACCAAGAAAGATGTCCACATGCTCAAACAAAAA
AGAAAAGAAAAGAGAGAAAGAGAGAGAGAGGGGGAGAGAGAGAGAAACTG
AGGCTACATGAGACCTTGTCTCAAAAACAAAACCTAAAGTAGCAGTGTTT
ACACTCCAGATCTATCTGTTTCCATGGCTGCATCCAGGAATGTGGTCGTT
CTTTTTCCTCATCCAATTAACATACAAACAAATATATTTACTCTTCCACT
TTAAGCTGATTCTTAAACTAAAAAAAAAAAGTGGAATTTAGTTATAACCT
CATCCTCATCTAAAAAGATTGGTGTGTGTCTGTATGTGCATGTGTATAAG
TTCTAAAGAGTCAGGAGTGAAAAGCAGTCTCTCAAGTATCCTCAACGAAT
GGGAAACCCCAAAAAGGTGAAGGATTTCTTATAATTATAAAAATGGCGGG
ATGGCCCGCGGGGCCTAAACCCATTCC

TAGTAATATAATGGGCAACGCCTGAACCATACCACAGATTGTCCGCACGG
GCGCGCGTTGTGGAGGGATCCTCTTGTCGAGCTCCCCTATCTTGTTGAAA
TACACAACCACCAAACAGTCTTCGCATAATAACGTCGCACATAGGATGCA
AGCGCCACCTTATTAACCGTCGTTGTATATTCAATATACTTACTACATTC
ATACTACACATTCACTCTTCCTTACTTAGCCCAAGGTTATCCCGACACTG
GTATACGCTCCTAGCAGTCNCATCTGCTGCTTTGTCCAGCCGTTNTATTA
CCGAAACGACTAGAGTATATCAGCAAAGCANCAGCAACTACTTTATATAT
TCTACTCCTAATAGATTTTCGTCCCTATCCACTACATACTCTCGCCCACA
CTATCACTTCATATCACTGTCTGAACAATAATATCAAAAATTGATATACG
TTAATAATAATTTCGTGTATTACATAGAGTGTACATCGTAGAATAGAATA
TGTCGGTAATAAGGCAACTGAACAAGAAGAAATTAACGAACACTAGACGT
GTATACGGGTAAACGTACTTAATTCGTCGGAAGTATAGTAATCGCGTTAC
TTATCTAGCGGAATCGTTACTATTCTCCGAGCAATCCATCTCTCGAATAA
TATATAGATAAATATTAAGCACATATAAAGCAAGCGTAAGAAACACGATA
TAATTACCATAGACAAAATAATACCACACAGTATGAACATGATCATCGTG
AAGTCGCGCGCGCCATATCTAACCAAGACAATATTATAAAATCTATGAGT
GAACTAAATAACACGCCCAAATAATAAAAAATGTACGACGAGACAACGAT
AAGAGAGTAATAAACGTAGCGACACACACACTATGTAACATATTCTCATT
ATAAGAACGATATACTGACAACTTTAATATCTCCTACTCACNATTAATTA
CTAATNATTTAATATACTATCGTCTACACATAGCACGTGTATATCATGTA
ATAATCTCTCATAACGACATTTATACTGATTTATAGTTAGCATAATATCT
TAATTAGTGTTGACATTATTATATGACTATTCTACTCCAGATATGTACGT
GGTATATNTAATTACAACAGTATATCAACGACGTCTCATCTATCGACTAT
ATGATTTATACTATTATGATCCAGTCTATGTGTGAGTATATTGCTACATA
CTATAAGCTAGCCTGTCCTAGAGATGACATAGCGATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_k06.b1 MSMg01no393_k06.b1 CHROMAT_FILE:
MSMg01no393_k06.b1 PHD_FILE: MSMg01no393_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:39 2005
         (550 letters)



>mm_chr5_23589826_23590775
          Length = 950

 Score = 1058 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaggttatccttggttatgtagagaatcttaggttggctggacagtggtggca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggaattcaaggttatccttggttatgtagagaatcttaggttggctggacagtggtggca 639

                                                                       
Query: 64  caagcttttaatcccagcacttgggaggcagaggcaggcagatttctaaattcaaggcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caagcttttaatcccagcacttgggaggcagaggcaggcagatttctaaattcaaggcca 579

                                                                       
Query: 124 gcctggtctacagagtgagttccaggacagccagggctacacagagaaacacaagcctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gcctggtctacagagtgagttccaggacagccagggctacacagagaaacacaagcctct 519

                                                                       
Query: 184 tcccttccagcttccgactcggaccctgcagctgccttgatgttgatgcctaagaagaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcccttccagcttccgactcggaccctgcagctgccttgatgttgatgcctaagaagaac 459

                                                                       
Query: 244 cagattgccacctagcaacttctttttgaggaaggagtggttaccaagaaagatgtccac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cagattgccacctagcaacttctttttgaggaaggagtggttaccaagaaagatgtccac 399

                                                                       
Query: 304 atgctcaaacaaaaaagaaaagaaaagagagaaagagagagagagggggagagagagaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atgctcaaacaaaaaagaaaagaaaagagagaaagagagagagagggggagagagagaga 339

                                                                       
Query: 364 aactgaggctacatgagaccttgtctcaaaaacaaaacctaaagtagcagtgtttacact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aactgaggctacatgagaccttgtctcaaaaacaaaacctaaagtagcagtgtttacact 279

                                                                       
Query: 424 ccagatctatctgtttccatggctgcatccaggaatgtggtcgttctttttcctcatcca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccagatctatctgtttccatggctgcatccaggaatgtggtcgttctttttcctcatcca 219

                                                                       
Query: 484 attaacatacaaacaaatatatttactcttccactttaagctgattcttaaactaaaaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 attaacatacaaacaaatatatttactcttccactttaagctgattcttaaactaaaaaa 159

                  
Query: 544 aaaaagt 550
           |||||||
Sbjct: 158 aaaaagt 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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