MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-393K12
Chromosome	5 (Build37)
Map Location	93,229,379 - 93,229,795
singlet/doublet	singlet
Overlap gene	Shroom3
Upstream gene	Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik
Downstream gene	LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ppia-ps5_892.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433914
definition	note : peptidyl-prolyl cis-trans isomerase A pseudogene 5_892.1 pseudo : _no_value

name	Rchy1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68098 MGI:1915348
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thap6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381650 MGI:1922436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 33 ESTs, 2 Proteins

name	Gm1045 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381651 MGI:2685891
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	Cdkl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53886 MGI:1858227
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040574 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs

name	G3bp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23881 MGI:2442040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	Vdp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56041 MGI:1929095
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040605 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040605
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1101 ESTs, 10 Proteins

name	U90926 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57425 MGI:1930915
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Ppef2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19023 MGI:1342304
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asahl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67111 MGI:1914361
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sdad1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231452 MGI:2140779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cxcl9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17329 MGI:1352449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cxcl10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15945 MGI:1352450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cxcl11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56066 MGI:1860203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040228 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	Art3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109979 MGI:1202729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nup54 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269113 MGI:1920460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scarb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12492 MGI:1196458
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1381 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384198 MGI:2686227
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D5Ertd593e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52331 MGI:1261768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932413O14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320696 MGI:2444555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Shroom3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27428 MGI:1351655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC623798 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 756 ESTs, 9 Proteins pseudo : _no_value

name	Ankrd56 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78088 MGI:1925338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sept11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52398 MGI:1277214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccni (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12453 MGI:1341077
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040826 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 4 Proteins pseudo : _no_value

name	2010109A12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75610 MGI:1922860
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ccng2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12452 MGI:1095734
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC632115 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:632115
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 40 Proteins pseudo : _no_value

name	EG330129 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330129 MGI:3648817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 18 ESTs, 12 Proteins

name	LOC100040885 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 166 ESTs, 50 Proteins

name	LOC666064 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666064
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100040909 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040909
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 21 Proteins pseudo : _no_value

name	C87414 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381654 MGI:2141341
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 159 ESTs, 46 Proteins

name	LOC666075 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666075
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 36 Proteins pseudo : _no_value

name	LOC666077 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 115 ESTs, 15 Proteins pseudo : _no_value

name	LOC666081 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666081
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Rchy1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892747 GeneID:68098 MGI:1915348
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and CHY zinc finger domain containing 1 transcript_id : NM_026557.3

name	Thap6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374926 GeneID:381650 MGI:1922436
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 33 ESTs, 2 Proteins product : THAP domain containing 6 transcript_id : XM_980102.1

name	Gm1045 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374928 GeneID:381651 MGI:2685891
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : gene model 1045, (NCBI) transcript_id : XM_355614.4

name	Cdkl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859824 GeneID:53886 MGI:1858227
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase-like 2 (CDC2-related kinase) transcript_id : NM_177270.3

name	Cdkl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:8393079 GeneID:53886 MGI:1858227
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase-like 2 (CDC2-related kinase) transcript_id : NM_016912.1

name	LOC100040574 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254007 GeneID:100040574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs product : hypothetical protein LOC100040574 transcript_id : XM_001475024.1

name	G3bp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248573 GeneID:23881 MGI:2442040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating protein (SH3 domain) binding protein 2 transcript_id : NM_011816.3

name	G3bp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248574 GeneID:23881 MGI:2442040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating protein (SH3 domain) binding protein 2 transcript_id : NM_001080796.1

name	G3bp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248567 GeneID:23881 MGI:2442040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating protein (SH3 domain) binding protein 2 transcript_id : NM_001080794.1

name	G3bp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248578 GeneID:23881 MGI:2442040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating protein (SH3 domain) binding protein 2 transcript_id : NM_001080797.1

name	G3bp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248569 GeneID:23881 MGI:2442040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating protein (SH3 domain) binding protein 2 transcript_id : NM_001080795.1

name	Vdp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956095 GeneID:56041 MGI:1929095
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vesicle docking protein transcript_id : NM_019490.1

name	LOC100040605 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254013 GeneID:100040605
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1101 ESTs, 10 Proteins product : similar to ribosomal protein L13 transcript_id : XM_001475096.1

name	U90926 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374929 GeneID:57425 MGI:1930915
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence U90926 transcript_id : XM_888097.2

name	Ppef2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560803 GeneID:19023 MGI:1342304
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase, EF hand calcium-binding domain 2 transcript_id : NM_011148.2

name	Asahl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345314 GeneID:67111 MGI:1914361
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-acylsphingosine amidohydrolase (acid ceramidase)-like transcript_id : NM_025972.2

name	Sdad1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366971 GeneID:231452 MGI:2140779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SDA1 domain containing 1 transcript_id : NM_172713.2

name	Cxcl9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801703 GeneID:17329 MGI:1352449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 9 transcript_id : NM_008599.3

name	Cxcl10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946575 GeneID:15945 MGI:1352450
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 10 transcript_id : NM_021274.1

name	Cxcl11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9507070 GeneID:56066 MGI:1860203
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 11 transcript_id : NM_019494.1

name	Art3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32171189 GeneID:109979 MGI:1202729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosyltransferase 3 transcript_id : NM_181728.1

name	Nup54 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326535 GeneID:269113 MGI:1920460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleoporin 54 transcript_id : NM_183392.2

name	Scarb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377768 GeneID:12492 MGI:1196458
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : scavenger receptor class B, member 2 transcript_id : NM_007644.3

name	Gm1381 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85702012 GeneID:384198 MGI:2686227
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1381, (NCBI) transcript_id : NM_001033478.1

name	D5Ertd593e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386655 GeneID:52331 MGI:1261768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 5, ERATO Doi 593, expressed transcript_id : NM_175096.3

name	4932413O14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130351 GeneID:320696 MGI:2444555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932413O14 gene transcript_id : NM_177230.3

name	Shroom3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606394 GeneID:27428 MGI:1351655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : shroom family member 3 transcript_id : NM_015756.2

name	Shroom3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606378 GeneID:27428 MGI:1351655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : shroom family member 3 transcript_id : NM_001077595.1

name	Shroom3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606380 GeneID:27428 MGI:1351655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : shroom family member 3 transcript_id : NM_001077596.1

name	Ankrd56 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366393 GeneID:78088 MGI:1925338
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 56 transcript_id : NM_175270.3

name	Sept11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57634517 GeneID:52398 MGI:1277214
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : septin 11 transcript_id : NM_001009818.1

name	Ccni (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560455 GeneID:12453 MGI:1341077
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin I transcript_id : NM_017367.2

name	2010109A12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254027 GeneID:75610 MGI:1922860
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 2010109A12 gene transcript_id : XM_001475713.1

name	Ccng2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378472 GeneID:12452 MGI:1095734
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin G2 transcript_id : NM_007635.3

name	EG330129 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374943 GeneID:330129 MGI:3648817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 18 ESTs, 12 Proteins product : predicted gene, EG330129 transcript_id : XM_284106.6

name	LOC100040885 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254029 GeneID:100040885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 105 ESTs, 47 Proteins product : similar to Expressed sequence AA792892, transcript variant 1 transcript_id : XM_001475748.1

name	LOC100040885 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254031 GeneID:100040885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 128 ESTs, 47 Proteins product : similar to Expressed sequence AA792892, transcript variant 2 transcript_id : XM_001475767.1

name	LOC100040885 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254033 GeneID:100040885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 140 ESTs, 47 Proteins product : similar to Expressed sequence AA792892, transcript variant 3 transcript_id : XM_001475785.1

name	LOC100040885 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254035 GeneID:100040885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 90 ESTs, 3 Proteins product : similar to Expressed sequence AA792892, transcript variant 4 transcript_id : XM_001475804.1

name	C87414 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254040 GeneID:381654 MGI:2141341
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 152 ESTs, 43 Proteins product : expressed sequence C87414 transcript_id : XM_001475849.1

name	C87414 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374909 GeneID:381654 MGI:2141341
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 142 ESTs, 3 Proteins product : expressed sequence C87414, transcript variant 3 transcript_id : XM_898543.2

name	C87414 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374908 GeneID:381654 MGI:2141341
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 157 ESTs, 43 Proteins product : expressed sequence C87414, transcript variant 5 transcript_id : XM_898556.2

name	C87414 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374905 GeneID:381654 MGI:2141341
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 151 ESTs, 43 Proteins product : expressed sequence C87414, transcript variant 6 transcript_id : XM_981565.1

name	Rchy1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386058 CCDS:CCDS19424.1 GeneID:68098 MGI:1915348
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : zinc finger protein 363 product : androgen receptor N-terminal-interacting protein protein_id : NP_080833.1

name	Thap6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374927 GeneID:381650 MGI:1922436
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to THAP domain containing 6 protein_id : XP_985196.1 transl_except : (pos:92394255..92394257,aa:OTHER) transl_except : (pos:92394276..92394278,aa:OTHER) transl_except : (pos:92394309..92394311,aa:OTHER) transl_except : (pos:92395501..92395503,aa:OTHER) transl_except : (pos:92395573..92395575,aa:OTHER) transl_except : (pos:92395600,aa:OTHER) transl_except : (pos:92398567..92398568,aa:OTHER) transl_except : (pos:92398572..92398574,aa:OTHER) transl_except : (pos:92398605..92398607,aa:OTHER) transl_except : (pos:92398611..92398613,aa:OTHER) transl_except : (pos:92398728..92398730,aa:OTHER) transl_except : (pos:92398758..92398760,aa:OTHER) transl_except : (pos:92398791..92398793,aa:OTHER) transl_except : (pos:92398812..92398814,aa:OTHER)

name	Gm1045 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38080305 GeneID:381651 MGI:2685891
definition	codon_start : 1 product : similar to Chromosome 4 open reading frame 26 protein_id : XP_355614.1

name	Cdkl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859825 CCDS:CCDS19425.1 GeneID:53886 MGI:1858227
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : cyclin-dependent kinase-like 2 (CDC2-related kinase) isoform 2 protein_id : NP_796244.2

name	Cdkl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393080 CCDS:CCDS19426.1 GeneID:53886 MGI:1858227
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : cyclin-dependent kinase-like 2 (CDC2-related kinase) isoform 1 protein_id : NP_058608.1

name	LOC100040574 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254008 GeneID:100040574
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475074.1

name	G3bp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248570 GeneID:23881 MGI:2442040
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 3; Ras-GTPase-activating protein (GAP<120>) SH3-domain binding protein 2 product : Ras-GTPase-activating protein (GAP120) SH3-domain binding protein 2 isoform b protein_id : NP_001074264.1

name	G3bp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248575 GeneID:23881 MGI:2442040
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 4; Ras-GTPase-activating protein (GAP<120>) SH3-domain binding protein 2 product : Ras-GTPase-activating protein (GAP120) SH3-domain binding protein 2 isoform b protein_id : NP_001074265.1

name	G3bp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248568 GeneID:23881 MGI:2442040
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 2; Ras-GTPase-activating protein (GAP<120>) SH3-domain binding protein 2 product : Ras-GTPase-activating protein (GAP120) SH3-domain binding protein 2 isoform a protein_id : NP_001074263.1

name	G3bp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248579 GeneID:23881 MGI:2442040
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 5; Ras-GTPase-activating protein (GAP<120>) SH3-domain binding protein 2 product : Ras-GTPase-activating protein (GAP120) SH3-domain binding protein 2 isoform a protein_id : NP_001074266.1

name	G3bp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982757 CCDS:CCDS19427.1 GeneID:23881 MGI:2442040
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; Ras-GTPase-activating protein (GAP<120>) SH3-domain binding protein 2 product : Ras-GTPase-activating protein (GAP120) SH3-domain binding protein 2 isoform a protein_id : NP_035946.2

name	Vdp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956096 GeneID:56041 MGI:1929095
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005829 - cytosol [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008565 - protein transporter activity [Evidence IDA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IDA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : transcytosis associated protein p115; vesicle docking protein, 115 kDa product : vesicle docking protein protein_id : NP_062363.1

name	LOC100040605 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254014 GeneID:100040605
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475146.1

name	U90926 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897926 GeneID:57425 MGI:1930915
definition	codon_start : 1 product : hypothetical protein LOC57425 protein_id : XP_893190.1

name	Ppef2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755140 GeneID:19023 MGI:1342304
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence ISS] GO_process : GO:0050906 - detection of stimulus during sensory perception [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 product : serine/threonine protein phosphatase with EF-hand motifs 2 protein_id : NP_035278.1

name	Asahl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21735433 CCDS:CCDS19428.1 GeneID:67111 MGI:1914361
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005764 - lysosome [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : N-acylethanolamine-hydrolyzing acid amidase product : N-acylsphingosine amidohydrolase (acid ceramidase)-like protein_id : NP_080248.1

name	Sdad1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370042 CCDS:CCDS19429.1 GeneID:231452 MGI:2140779
definition	codon_start : 1 product : SDA1 domain containing 1 protein_id : NP_766301.1

name	Cxcl9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626107 GeneID:17329 MGI:1352449
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA] codon_start : 1 note : monokine induced by gamma interferon; small inducible cytokine B subfamily (Cys-X-Cys), member 9; gamma interferon-induced monokine product : chemokine (C-X-C motif) ligand 9 protein_id : NP_032625.2

name	Cxcl10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946576 GeneID:15945 MGI:1352450
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA] codon_start : 1 note : interferon activated gene 10; small inducible cytokine B subfamily (Cys-X-Cys), member 10 product : chemokine (C-X-C motif) ligand 10 protein_id : NP_067249.1

name	Cxcl11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9507071 GeneID:56066 MGI:1860203
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence TAS]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : small inducible cytokine subfamily B (Cys-X-Cys), member 11 product : chemokine (C-X-C motif) ligand 11 protein_id : NP_062367.1

name	Art3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32171190 GeneID:109979 MGI:1202729
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 function : unknown note : ART3 mono(ADP-ribosyl)transferase; mono-ADP-ribosyltransferase 3; NAD(P)(+)--arginine ADP-ribosyltransferase product : ADP-ribosyltransferase 3 protein_id : NP_859417.1

name	Nup54 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930543 CCDS:CCDS19430.1 GeneID:269113 MGI:1920460
definition	codon_start : 1 note : nucleoporin 54kDa product : nucleoporin 54 protein_id : NP_899248.1

name	Scarb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680878 CCDS:CCDS19431.1 GeneID:12492 MGI:1196458
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] codon_start : 1 note : CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2; LIMP II product : scavenger receptor class B, member 2 protein_id : NP_031670.1

name	Gm1381 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702013 CCDS:CCDS19432.1 GeneID:384198 MGI:2686227
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC384198 protein_id : NP_001028650.1

name	D5Ertd593e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424697 CCDS:CCDS19433.1 GeneID:52331 MGI:1261768
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 product : genethonin 1 protein_id : NP_780305.1

name	4932413O14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893281 CCDS:CCDS19434.1 GeneID:320696 MGI:2444555
definition	codon_start : 1 product : hypothetical protein LOC320696 protein_id : NP_796204.1

name	Shroom3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606395 GeneID:27428 MGI:1351655
definition	GO_component : GO:0005912 - adherens junction [Evidence IDA]; GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IDA] GO_process : GO:0007389 - pattern specification [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; shroom product : shroom isoform 1 protein_id : NP_056571.2

name	Shroom3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606379 GeneID:27428 MGI:1351655
definition	GO_component : GO:0005912 - adherens junction [Evidence IDA]; GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IDA] GO_process : GO:0007389 - pattern specification [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; shroom product : shroom isoform 2 protein_id : NP_001071063.1

name	Shroom3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606381 GeneID:27428 MGI:1351655
definition	GO_component : GO:0005912 - adherens junction [Evidence IDA]; GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IDA] GO_process : GO:0007389 - pattern specification [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 3; shroom product : shroom isoform 2 protein_id : NP_001071064.1

name	Ankrd56 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424924 CCDS:CCDS19435.1 GeneID:78088 MGI:1925338
definition	codon_start : 1 product : ankyrin repeat domain 56 protein_id : NP_780479.1

name	Sept11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57634518 GeneID:52398 MGI:1277214
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA] codon_start : 1 product : septin 11 protein_id : NP_001009818.1

name	Ccni (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393063 CCDS:CCDS19436.1 GeneID:12453 MGI:1341077
definition	GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence ISS] GO_process : GO:0000074 - regulation of progression through cell cycle [Evidence TAS] codon_start : 1 exception : mismatches in translation product : cyclin I protein_id : NP_059063.1

name	2010109A12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254028 GeneID:75610 MGI:1922860
definition	codon_start : 1 product : hypothetical protein LOC75610 protein_id : XP_001475763.1

name	Ccng2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982477 CCDS:CCDS19437.1 GeneID:12452 MGI:1095734
definition	GO_component : GO:0016012 - sarcoglycan complex [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IDA] codon_start : 1 exception : mismatches in translation product : cyclin G2 protein_id : NP_031661.2

name	EG330129 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28516430 GeneID:330129 MGI:3648817
definition	codon_start : 1 product : similar to P300/CBP-associated factor protein_id : XP_284106.1

name	LOC100040885 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254036 GeneID:100040885
definition	codon_start : 1 product : hypothetical protein isoform 4 protein_id : XP_001475854.1

name	LOC100040885 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254030 GeneID:100040885
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001475798.1

name	LOC100040885 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254032 GeneID:100040885
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001475817.1

name	LOC100040885 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254034 GeneID:100040885
definition	codon_start : 1 product : hypothetical protein isoform 3 protein_id : XP_001475835.1

name	C87414 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897840 GeneID:381654 MGI:2141341
definition	codon_start : 1 product : hypothetical protein LOC381654 isoform 3 protein_id : XP_903636.1

name	C87414 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254041 GeneID:381654 MGI:2141341
definition	codon_start : 1 product : hypothetical protein LOC381654 protein_id : XP_001475899.1

name	C87414 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897845 GeneID:381654 MGI:2141341
definition	codon_start : 1 product : hypothetical protein LOC381654 isoform 5 protein_id : XP_903649.1

name	C87414 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374906 GeneID:381654 MGI:2141341
definition	codon_start : 1 product : hypothetical protein LOC381654 isoform 6 protein_id : XP_986659.1

name	LOC632115 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632115
definition	number : 7 pseudo : _no_value

name	LOC632115 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632115
definition	number : 6 pseudo : _no_value

name	LOC632115 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632115
definition	number : 5 pseudo : _no_value

name	LOC632115 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632115
definition	number : 4 pseudo : _no_value

name	LOC632115 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632115
definition	number : 3 pseudo : _no_value

name	LOC632115 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632115
definition	number : 2 pseudo : _no_value

name	LOC632115 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632115
definition	number : 1 pseudo : _no_value

name	LOC666064 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666064
definition	number : 5 pseudo : _no_value

name	LOC666064 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666064
definition	number : 4 pseudo : _no_value

name	LOC666064 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666064
definition	number : 3 pseudo : _no_value

name	LOC666064 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666064
definition	number : 2 pseudo : _no_value

name	LOC666064 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666064
definition	number : 1 pseudo : _no_value

name	LOC666081 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666081
definition	number : 1 pseudo : _no_value

name	LOC666081 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666081
definition	number : 2 pseudo : _no_value

name	LOC666081 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666081
definition	number : 3 pseudo : _no_value

name	LOC666081 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666081
definition	number : 4 pseudo : _no_value

name	LOC666081 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666081
definition	number : 5 pseudo : _no_value

name	LOC100040228 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254001 GeneID:100040228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to CWF19-like 1, cell cycle control pseudo : _no_value transcript_id : XR_031703.1

name	LOC623798 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254023 GeneID:623798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 756 ESTs, 9 Proteins product : similar to 60S ribosomal protein L9 pseudo : _no_value transcript_id : XR_032331.1

name	LOC100040826 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254024 GeneID:100040826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 4 Proteins product : similar to RNA polymerase II transcriptional coactivator pseudo : _no_value transcript_id : XR_032383.1

name	LOC100040909 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254039 GeneID:100040909
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 21 Proteins product : similar to D5Ertd577e protein pseudo : _no_value transcript_id : XR_032446.1

name	LOC666075 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254042 GeneID:666075
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 36 Proteins product : similar to D5Ertd577e protein pseudo : _no_value transcript_id : XR_032496.1

name	LOC666077 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254004 GeneID:666077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 115 ESTs, 15 Proteins product : similar to Expressed sequence C87414 pseudo : _no_value transcript_id : XR_035665.1

clone name	MSMg01-493D20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-384C13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-197N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150I08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-195N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261E22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-165J21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-355H08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-478C09
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-040A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042O22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-393K12.T7 (MSMg01no393_k12.b1)	MSMg01-393K12.TJ (MSMg01no393_k12.g1)
ACC	AG494899	AG494900
length	759	1,860
length of high quality (start - end)	484 (41 - 524)	---
definition	CHROMAT_FILE: MSMg01no393_k12.b1 PHD_FILE: MSMg01no393_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:41 2005	CHROMAT_FILE: MSMg01no393_k12.g1 PHD_FILE: MSMg01no393_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:41 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC ATAGCTGATCTACCACTAGGAGATGGGATCTGGTTGGAGGACATAAGTCG CCAGAATGTGTCTTGAAGGGCATATCTTGTCCCTCGCCCTTTTATGGCTT TCTCTACTTCCTGGATGCCACAGATAAGGATCTCTGCTCTGCATCCTTTT TTTTTTTTTTTTCTTTTTTTTTCCACCACGCCCGGCTTTGCTCTGCATCC TATTCTCAAGATTCAAGATTCGAACCACTGACCTCAAACTTGCCTTGACC TTCCTTCCTGCACTTCCGGTGCTGGGATCACACAATTGCATGTGATTTGC GCAGGAATTTGTCCCAACAAGGAAAAGCTAACTAGCACACAGAGCAAACT AAATGAATAGGAAAATGTGGATTTCTTTTATTATTATTTTTTGCTTTGCC TAAGTTTAATCTAGTCTTCCATACAGACCACTCTTGCTAATTAAATAAAT AAATGAAGCATTACACCTTTTGTGTTAGTCAGGGAAAATGCTACCATGGC TAGATCATTTGAGTAATCTTTGCATACAAGGTTGTCTCTAAAAAAAAGGG TGGCTCTTCTCTGAAAGCCTTTCTTCCTTGCTCTTTTTTTTTGCCAAAAA GACCTGGCTACTTTTTTAAAGAGGGGGTGTTTAAATCACCACGTTACAAT TTGTGGTACGGGCTAATTTTGGGGTTTTACATCCTAAAAAATTTTGTTTT TATAAAAAN	ATATCTTTTGCATTATCTCACAACATAATCTAATATANNCTATCCGACGT CGNCTATGCCTGTGGCCGTGCTACACTGTATAATGAATGGGGAGGAGCGG TGGGCAACATACCAGCATTTAGTGCTGTTNTTNTNANCGTNCTNGTGTTT CTNTCCTACGCGCTGTCTCGAGGCAGNCGGCGCTGCGGGAAGTGAGGAGT NCTGTTGACAACNCAATAACTATAGTAGACTAGCGCGCTTACCTCTATTA CACTGACTATAGCTATATGGANCGACAACCGTCGCTANCGCCGGCAGCGT AGGGATGTGCATAGACGCAATCGAGTAGTGTATNCGGTCCGGATTGCGCG TTGTTATCGACGCACTNTCTATCGACTGCTTCNNCGCAACTGCACGCATA GCGTCCGCACTATGCAGTAGACTNCTTTTCGTACGTCTACGACTGGTGAC GGATGTGTCCGTGAGAGCATNTTCCTATTAGTAACTAGCGAACAACGAAT AATATGCGTGTCCTGTAGTGGTGATTGTAATATGGCGTCCGCATGCTGAG TGCATGTANCGCAGAAGTNACCTNATATACTATCAGCATATGTTACATAC TAGCGATCATATATCTGAGATGGNAGNGTACGGCNATCAGTCACGAGTAA GTATGCACACGTCGGTTATCTGGGCACACCATATCACAGTACATCGTTAC TCGCATCATAGCTTCGCATGTGTACGTATGGGGNAGTGTCGCGTACCGTC GTAGCTTATCGCAGTAATNAGTACATTGATGCGGCAGGAGACGGTGANGT ATGGGTCGTAGTCGGATGGTGANGTGCTCATGGATGGTCCTGGCTGGTGA CTGTGTCTGGNGCTACGTAGACTGTAGCGTGTGCATCTAGCAAGAGATCG AAGTACTGACGCGCTACGCGAGCANGTGACATGATGTGTNGATCACAGCT ATGNGNTGAGCAGTCGCNAGTCGATGTTCTGATGTCGCTTACAGATTGAT ACTGCGCGATCGTATATGCGGCTGGANCGAGCTATCAGGCTACATAACTC ATCCTCAGTTTACGACGCTATCCGGAGCTGATAAGTCNATGAGTACCGCG TGCGCACCATCTCAGCTATGATTCGGCATCTCTCTGCGATTCAGCGACTC GACGTCGCTATCATGCGAACCACNCTGGNCTGTGACATGTGAGTGACGTA GACGAGTGATGTGACTGNCGCAGAGNTAGCGTGTCGCATGCGAATATATA TGACAGCATACGCGATAGGTCAGGTGAGCTATACATGTCATTCATTGATT AGTGATGAGTATAGCGCGATATGCGAGTGCTGACGGCTGTGANTNGCACG NCGNTANCATGACGTACTGATCGCGTCTGCTTNCTGGAATTGTCGATGCG CTGATACATATGTCGCATTCATACTATCGCGCCTGCTATATCANATCGAC GCGTATGTATGATAGCAGTTATCTGAGATATGCNATCGCACATCAGNGAT ATCTACCAGTTGTTTTANTATCCTGCGCNACTTGANCGTCGACATACNCC TGNCGTGTATCGACGATCATCAGNCGAGTACGCTATGCGCTCAGACGATG ANTACGGATCGCTCGCACACACATCACTGATGTAGATCNTCTGATGCGNC NTCNCTTCATTTNTAAGCCATATCATCATGATGTGTATGTCGNGTCAGCC ATGNACGACGCGACGCNCATCATACGTANTGCGTGCTCGTGCCTCGTTCG CTCTTTGATCATANCATCACTCGGGATGTGTACGATATCGCCTGGCAGAC TGTGTGTGTAGTCTGATGCACNGCTGTGGTTATCAGTATCGTATAGATCG TCTAGTCTGG
quality values	Open. Hide. 9 9 9 9 9 15 10 8 8 8 8 12 15 23 28 28 28 30 48 48 30 29 28 28 27 21 21 11 12 12 9 9 9 22 22 15 15 10 12 12 26 31 53 53 36 36 36 35 31 31 28 28 28 27 27 11 13 11 11 11 11 10 25 27 37 37 41 48 48 48 35 35 36 34 34 37 43 50 47 47 47 57 57 57 59 59 59 68 68 48 53 48 48 54 54 57 57 57 57 54 54 57 57 54 50 53 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 59 68 59 59 57 57 57 57 57 57 57 57 57 57 59 62 62 62 52 52 52 62 44 62 52 52 62 62 52 62 62 62 62 62 62 62 62 62 62 62 52 62 52 52 52 62 62 43 62 39 39 43 44 44 43 52 52 62 62 62 62 52 52 62 62 62 57 57 52 57 57 52 57 52 57 52 57 57 57 57 57 57 57 57 57 59 68 68 68 59 59 57 57 52 57 57 57 57 57 57 57 52 52 52 52 52 43 43 32 32 32 44 43 57 52 57 57 57 59 54 57 52 52 52 52 52 52 52 57 57 57 57 57 54 52 57 57 43 37 52 57 57 57 57 48 48 48 59 59 54 57 57 57 57 57 57 57 57 57 57 47 48 48 57 48 47 47 59 59 43 44 46 46 44 47 47 54 57 59 59 57 48 46 46 46 43 43 43 48 46 43 43 43 43 43 43 43 43 46 46 36 43 43 48 43 57 43 54 54 59 57 48 43 43 43 39 39 37 37 39 59 59 59 59 48 48 48 48 48 48 48 47 47 47 47 43 59 43 34 28 35 31 37 41 37 34 32 24 24 20 32 27 33 33 33 33 33 32 30 30 26 28 23 28 28 37 37 39 47 37 39 37 41 37 37 40 39 39 37 25 17 9 9 9 13 10 18 23 21 18 22 34 28 37 34 28 28 13 13 13 28 28 41 28 28 13 13 13 18 18 18 12 12 11 21 15 30 18 14 8 8 8 13 14 28 28 22 17 10 10 10 11 10 19 24 16 16 15 11 10 10 10 10 19 17 15 9 8 8 7 7 7 15 12 15 12 12 9 9 10 12 12 11 9 10 9 9 13 8 10 10 12 13 12 14 16 15 12 11 16 13 10 10 9 9 9 9 8 8 8 8 8 10 10 10 10 9 12 11 12 12 14 10 14 13 19 19 16 18 18 25 19 19 11 9 9 15 9 8 8 10 8 8 8 7 8 7 8 8 10 11 10 8 6 6 7 8 12 15 12 11 10 6 8 8 6 6 8 11 10 11 12 18 12 14 14 15 15 18 8 9 7 7 13 10 9 9 15 8 10 6 6 6 6 6 9 8 8 8 8 8 8 10 11 8 8 8 8 8 8 10 8 8 8 8 8 7 7 8 9 19 12 12 9 9 11 9 22 25 18 19 12 10 10 8 8 6 8 6 6 8 7 11 15 9 9 13 9 9 9 9 11 8 8 8 8 8 8 9 9 9 3 0	Open. Hide. 8 8 8 8 6 6 6 6 6 6 6 6 8 8 8 8 8 10 10 9 9 9 10 10 10 10 8 6 6 6 6 6 10 12 11 11 3 0 0 3 10 10 8 8 6 6 6 6 8 8 8 3 0 3 8 8 8 8 6 6 6 6 8 8 8 8 10 8 10 9 6 8 6 6 8 10 6 6 8 8 10 8 8 8 8 8 8 8 8 6 6 6 6 8 8 10 8 8 6 8 6 6 6 6 6 6 8 6 6 8 8 10 8 8 8 8 8 8 8 12 10 10 10 13 13 17 12 8 3 0 3 3 0 3 0 3 0 3 8 3 0 3 3 0 3 8 8 9 9 8 15 3 0 3 10 10 8 8 8 7 7 7 8 8 8 10 8 10 6 6 6 7 6 6 6 3 0 3 9 8 9 9 9 8 10 6 6 6 6 6 6 6 8 8 8 8 6 6 8 3 0 3 6 6 6 6 6 6 6 11 11 3 0 3 8 8 8 8 8 8 8 8 8 9 9 6 10 6 9 8 8 8 8 8 8 8 6 6 8 6 8 8 8 8 8 8 6 6 6 8 8 8 8 8 9 9 8 8 8 8 7 8 8 8 6 6 8 8 10 8 3 0 3 11 8 8 8 8 6 6 6 6 8 8 8 8 3 0 3 8 8 8 9 6 6 6 6 8 10 7 9 10 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 9 9 9 6 6 6 6 10 10 10 10 3 0 3 8 8 7 7 7 6 6 6 6 6 7 14 18 18 13 8 8 8 8 8 6 8 6 6 6 6 8 10 8 6 3 0 3 8 8 8 9 6 6 6 6 8 6 6 8 8 3 0 0 3 8 9 12 9 9 6 6 6 6 6 6 11 10 6 6 6 6 8 8 8 10 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 3 0 3 8 8 6 6 6 6 6 6 8 8 8 6 6 6 6 6 8 8 6 6 6 6 8 6 6 6 6 6 6 7 6 8 8 8 8 6 8 8 8 8 8 8 8 6 3 0 3 6 6 6 6 8 6 6 8 8 8 11 6 6 6 6 6 8 6 6 6 6 8 10 8 8 6 6 6 6 6 6 7 6 8 8 8 10 13 10 11 14 10 11 8 7 8 7 7 10 8 10 10 9 9 10 10 10 6 8 8 6 10 6 6 8 6 6 6 6 8 8 6 6 6 6 10 10 10 9 9 10 11 10 8 8 3 0 3 7 6 7 6 10 6 8 3 0 3 8 8 3 0 3 10 8 6 6 6 6 9 10 8 8 6 6 6 6 6 6 6 6 8 10 9 6 6 6 6 6 10 8 6 6 6 8 8 9 9 11 11 8 8 6 6 6 6 10 8 8 8 3 0 3 3 0 3 8 8 8 11 11 3 0 3 6 8 8 9 9 10 11 14 17 15 10 6 6 6 6 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 10 10 11 15 15 8 8 8 8 8 8 9 10 10 8 8 6 6 6 6 8 8 9 9 9 10 10 10 12 10 10 11 6 6 6 6 6 8 8 8 7 7 8 8 11 11 6 8 6 6 8 8 10 6 6 3 0 3 6 6 6 6 8 8 9 9 8 8 8 10 10 9 9 9 10 10 9 9 9 11 11 11 9 6 6 6 6 6 6 6 3 0 3 6 8 8 8 6 6 6 6 6 6 6 6 6 7 6 7 10 6 6 6 6 8 12 10 10 8 3 0 3 9 6 6 6 7 6 6 6 7 6 6 6 6 6 6 7 6 6 6 6 6 6 3 0 3 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 10 11 11 9 8 8 7 7 7 3 0 3 6 6 8 10 8 8 10 8 8 8 8 8 8 8 10 8 8 6 6 11 6 7 7 8 8 8 8 8 10 9 6 8 6 6 8 6 6 6 6 6 6 6 6 8 8 8 8 6 6 6 6 6 6 6 6 6 6 6 6 6 8 3 0 3 6 6 6 6 6 6 6 6 6 10 8 8 3 0 3 6 6 6 8 8 8 8 6 8 8 8 3 0 3 0 3 8 8 8 8 8 8 8 8 8 3 0 3 6 6 6 6 6 6 8 8 8 8 6 6 6 8 8 10 9 7 7 6 10 10 10 11 10 8 6 6 6 8 8 6 6 6 6 6 8 8 8 8 6 6 6 8 8 8 11 11 10 6 6 6 6 6 6 10 3 0 3 7 8 6 6 6 6 6 6 6 6 8 10 10 10 10 9 9 9 9 9 10 10 8 8 6 6 6 6 6 8 8 10 7 7 7 7 10 8 8 9 9 9 8 6 6 6 8 6 6 8 6 6 6 6 7 6 6 6 3 0 3 8 6 8 6 6 6 6 6 6 6 6 6 6 6 7 6 6 6 6 6 6 6 11 11 9 9 9 10 10 6 6 6 6 6 6 8 10 10 10 11 11 9 9 10 6 6 6 6 8 8 6 7 6 6 6 6 8 6 6 8 8 9 6 10 6 6 8 6 8 8 6 6 8 8 6 6 6 6 6 6 6 8 8 3 0 3 7 8 3 0 3 6 6 6 6 6 6 7 11 8 8 8 8 6 6 6 6 6 6 6 6 6 10 8 6 6 6 8 11 8 8 8 8 6 6 6 6 3 0 3 10 10 10 8 8 3 0 3 6 6 8 6 8 8 7 6 6 6 6 6 6 6 6 6 6 6 10 10 10 10 10 11 10 6 6 6 6 6 6 8 8 13 10 9 8 8 8 6 6 6 6 6 6 8 8 10 8 8 8 8 8 8 11 11 11 12 18 13 10 8 8 8 8 8 8 8 8 8 8 8 10 8 6 6 6 6 8 6 6 6 6 10 10 9 10 8 10 10 10 10 10 14 14 11 11 9 8 7 7 7 8 8 8 8 8 10 6 8 8 8 8 8 3 0 3 0 3 6 8 6 3 0 3 3 0 3 3 0 3 9 8 8 6 6 8 6 9 11 11 11 11 11 11 19 14 10 10 8 8 8 8 8 3 0 3 6 6 6 6 6 8 8 8 8 6 6 8 6 6 6 8 8 8 8 10 8 8 6 6 8 8 12 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 12 10 8 8 6 6 6 6 6 6 6 6 6 6 3 0 3 8 8 6 6 6 8 10 10 8 8 8 8 10 12 8 8 6 8 6 6 8 6 6 8 8 7 7 7 7 8 8 11 10 10 9 9 9 3 0 3 9 9 8 8 11 10 9 6 6 6 3 0 3 10 10 9 9 9 7 7 8 6 6 6 10 8 10 8 6 6 6 3 0 3 10 10 10 10 11 11 12 12 3 0 3 8 8 8 8 3 0 3 11 9 9 9 11 11 11 11 15 3 0 3 8 8 3 0 3 11 9 9 9 8 9 9 9 7 7 7 7 7 6 6 6 6 6 3 0 3 7 7 7 7 10 8 12 15 11 8 8 8 8 6 6 8 8 8 8 8 8 6 6 6 6 3 0 3 8 9 8 6 6 8 6 6 6 8 8 8 8 8 8 9 9 12 9 8 6 6 6 6 6 6 8 8 8 8 8 6 6 8 3 0 3 9 6 6 6 6 8 7 3 0 3 0 3 3 0 3 6 6 6 6 6 6 3 0 3 6 6 6 7 7 8 10 10 11 11 11 12 10 10 10 10 10 10 12 12 12 11 11 12 12 11 11 3 0 3 6 6 6 6 6 8 8 8 3 0 3 6 6 6 6 6 6 9 10 9 9 3 0 3 6 6 6 8 8 6 6 6 6 3 0 3 7 7 6 6 8 8 8 8 8 6 6 6 7 6 6 6 6 6 6 6 6 8 8 6 6 6 6 6 6 6 6 6 3 0 3 6 6 6 6 8 8 8 6 6 6 6 6 6 9 10 10 8 8 8 8 8 9 9 7 6 6 6 8 8 8 8 8 8 8 8 8 8 10 12 18 18 12 12 12 14 15 8 6 6 6 6 6 9 9 9 3 0 3 14 9 8 6 6 6 6 6 6 6 6 6 8 6 8 8 8 8 6 6 6 6 6 6 6 6 6 6 6 8 8 6 6 11 6 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no393_k12.b1 MSMg01no393_k12.b1 CHROMAT_FILE:
MSMg01no393_k12.b1 PHD_FILE: MSMg01no393_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:41 2005
         (484 letters)



>mm_chr5_93229175_93230059
          Length = 885

 Score =  623 bits (322), Expect = 0.0
 Identities = 410/480 (85%), Gaps = 66/480 (13%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagctg---atctaccactaggagatgggatctggttggaggacataagtcgc 61
           |||||||||||||   |  |||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 205 gaattcatagctgaaaa--taccactaggaggtgggatctggttggaggacgtaagtcgc 262

                                                                       
Query: 62  cagaatgtgtcttgaagggcatatcttgtccctcgcccttttatggctttctctacttcc 121
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 cagaatgtgtcttgaagggcatatcttgtccctcgcccttttacggctttctctacttcc 322

                                                                       
Query: 122 tggatgccacagataaggatctctgctctgcatccttttttttttttttttctttttttt 181
           |||||||||||||||||||||||                                     
Sbjct: 323 tggatgccacagataaggatctc------------------------------------- 345

                                                                       
Query: 182 tccaccacgcccggctttgctctgcatcctattctcaagattcaagattcgaaccactga 241
                            ||||||||||||||||||||      || ||||||||||||||
Sbjct: 346 -----------------tgctctgcatcctattctca------aa-attcgaaccactga 381

                                                                       
Query: 242 cctcaaacttgccttgaccttccttcctgcacttccggtgctgggatcacacaattgcat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctcaaacttgccttgaccttccttcctgcacttccggtgctgggatcacacaattgcat 441

                                                                       
Query: 302 gtgatttgcgcaggaatttgtcccaacaaggaaaagctaactagcacacagagcaaacta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtgatttgcgcaggaatttgtcccaacaaggaaaagctaactagcacacagagcaaacta 501

                                                                       
Query: 362 aatgaataggaaaatgtggatttcttttattattattttttgctttgcctaagtttaatc 421
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 502 aatgaataggaaaatgtggatttcttttattattattttttgctttgtctaagtttaatc 561

                                                                       
Query: 422 tagtcttccatacagaccactcttgctaattaaataaataaatgaagcattacacctttt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tagtcttccatacagaccactcttgctaattaaataaataaatgaagcattacacctttt 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space:   414750
Effective search space used:   414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information