Query= MSMg01no393_m23.b1 MSMg01no393_m23.b1 CHROMAT_FILE:
MSMg01no393_m23.b1 PHD_FILE: MSMg01no393_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:56 2005
(460 letters)
>mm_chr5_7152905_7153763
Length = 859
Score = 853 bits (441), Expect = 0.0
Identities = 453/457 (99%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactcacaagtcttccttttcaccatacagtttccattacagcattaaccagta 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactcacaag-cttccttttcaccatacagtttccattacagcattaaccagta 262
Query: 64 cattcattctgttatttccaagactctctaaaagcatcttacagtctccatttgtaatag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cattcattctgttatttccaagactctctaaaagcatcttacagtctccatttgtaatag 322
Query: 124 aaatagttaaacaggcctaaggggaaaataacagttgaaaattttatcccttgactaaag 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatagttaagcaggcctaaggggaaaataacagttgaaaattttatcccttgactaaag 382
Query: 184 atcaactttcaaagagaaatctatgagtttctcttgttttctcttgtgataattaatata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atcaactttcaaagagaaatctatgagtttctcttgttttctcttgtgataattaatata 442
Query: 244 aaattacaatgtcacaaatgtccataactatacaagcataacaaaagtatttaattattc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaattacaatgtcacaaatgtccataactatacaagcataacaaaagtatttaattattc 502
Query: 304 acctttactgttcaaaattactgttcctcattagtttacacaaataaatctttagatttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acctttactgttcaaaattactgttcctcattagtttacacaaataaatctttagatttt 562
Query: 364 acagaaactaacatgtactgtgcttaccattagcagggatgccactgtgttcagtatgtt 423
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 563 acagaaactaacatgtactgtgcttaccattggcagggatgccactatgttcagtatgtt 622
Query: 424 cattaaaatattagagtttcaaatctcattttatttc 460
|||||||||||||||||||||||||||||||||||||
Sbjct: 623 cattaaaatattagagtttcaaatctcattttatttc 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space: 382050
Effective search space used: 382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_m23.g1 MSMg01no393_m23.g1 CHROMAT_FILE:
MSMg01no393_m23.g1 PHD_FILE: MSMg01no393_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:56 2005
(396 letters)
>mm_chr5_7304108_7304903
Length = 796
Score = 741 bits (383), Expect = 0.0
Identities = 392/395 (99%)
Strand = Plus / Minus
Query: 1 ttatttttatttcttatgatcaaaaacaaaacaatacaaaagaaacaaacaaacaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttatttttatttcttatgatcaaaaacaaaacaatacaaaagaaacaaacaaacaaacaa 601
Query: 61 acaaaggagttaacagtttgtcggatgttagtgaataacaaattcccactctgtgctgtg 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aaaaaggagttaacagtttgtcggatgttagtgaataacaaattcccactctgtgctgtg 541
Query: 121 aacaatgtcatagacatggaagtagatgtgaaacaaatgcagccattgcttctgagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aacaatgtcatagacatggaagtagatgtgaaacaaatgcagccattgcttctgagttca 481
Query: 181 caaggaaataactatcatgctttagttaaagccctctctgggtaactgtgattacagttt 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 480 caaggaaataactatcatgctttagtaaaagccctctctgggtaactgtgattacagttt 421
Query: 241 gaacttgaggctttttaatgttgtttctagggcaagtggtttatctaatattcaacataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaacttgaggctttttaatgttgtttctagggcaagtggtttatctaatattcaacataa 361
Query: 301 atttaactggcctgtaaagataaaaataaatcaggtgtactaaaggctatcattagtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atttaactggcctgtaaagataaaaataaatcaggtgtactaaaggctatcattagtttt 301
Query: 361 tactcccaatactaaaatttaatactttagcttta 395
|||||||||||||||||||||||| ||||||||||
Sbjct: 300 tactcccaatactaaaatttaatagtttagcttta 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
