Query= MSMg01no394_c17.b1 MSMg01no394_c17.b1 CHROMAT_FILE:
MSMg01no394_c17.b1 PHD_FILE: MSMg01no394_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:27 2005
(520 letters)
>mm_chr5_101270366_101271280
Length = 915
Score = 855 bits (442), Expect = 0.0
Identities = 493/517 (95%), Gaps = 12/517 (2%)
Strand = Plus / Minus
Query: 4 ggaattcagaggcagttttcccaagcagaacaattcagtgagaagccaagagaagccact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ggaattcagaggcagttttcccaagcagaacaattcagtgagaagccaagagaagccact 803
Query: 64 ttgaatcagtcagctggagtgcagttttgagccagaatagctgagttgaaccagccagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttgaatcagtcagctggagtgcagttttgagccagaatagctgagttgaaccagccagcc 743
Query: 124 agagttgaggaagaacttattgaaaaagtgagcttattcagcagtaagcctctgagataa 183
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 742 agagttgagaaagaacttattgaaaaagtgagcttattcagcagtaagcctctgagatga 683
Query: 184 caattacatctagtgagtgaaagcaaccctactaactagtcaaggctaaacttgaactcc 243
|||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 682 caatgacacccagtgagtgaaagcaaccctactaactagtcaaggctagacttgaactcc 623
Query: 244 taatcctagtttcaaactaggattatagacctggccccaaacacccagtttagttcctca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taatcctagtttcaaactaggattatagacctggccccaaacacccagtttagttcctca 563
Query: 304 agcatcctaatttggggagacagcatcttgagttccccacattccacggtctgtattaac 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agcatcctaatttggagagacagcatcttgagttccccacattccacggtctgtattaac 503
Query: 364 ttgaacacattacaaacagacttttcttgtgtgctccctccaaccaccccccccctccag 423
| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 502 tcgaacgcattacaaacagacttttcttgtgtgctccctccagcc-----ccccctccag 448
Query: 424 gttcctgactcctgttcatacagggactcttctgaagatcatttaccagaatgcaaagct 483
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 447 gttcctgactcctgttcatacagggactcttctgaagatca-------gaatgcaaagct 395
Query: 484 cctctctgtggncatatacacgcctatctctcatgcc 520
||||||||||| |||||||| ||||||||||||||||
Sbjct: 394 cctctctgtggccatatacaagcctatctctcatgcc 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 915
Length adjustment: 10
Effective length of query: 510
Effective length of database: 905
Effective search space: 461550
Effective search space used: 461550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_c17.g1 MSMg01no394_c17.g1 CHROMAT_FILE:
MSMg01no394_c17.g1 PHD_FILE: MSMg01no394_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:27 2005
(457 letters)
>mm_chr5_101122271_101123127
Length = 857
Score = 822 bits (425), Expect = 0.0
Identities = 448/461 (97%), Gaps = 10/461 (2%)
Strand = Plus / Plus
Query: 1 ttattcttttggcaggaggtggtggcgcacgcctttaatcccagcacgcgggaggcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcttttggcaggaggtggtggcgcacgcctttaatcccagcacgcgggaggcagag 260
Query: 61 gcaggtggatctctgagtctgaggccagcctgggctacagaacaagttccaggccagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggtggatctctgagtctgaggccagcctgggctacagaacaagttccaggccagcca 320
Query: 121 gggctacacacagaaaccctgtctcaaaaaaccaaaaagaaaggaggggggactgcacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctacacacagaaaccctgtctcaaaaaaccaaaaagaaaggaggggggactgcacag 380
Query: 181 agtctttatctcaaaaaatcaaaacaagaatccaaaccaacatcagaaaaaggatcctta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 agtctttatctcaaaaaatcaaaacaagaatccaaaccaacatcagaaaaagaatcctta 440
Query: 241 tttaaaaagagagcgagagacgctaattgttt----atttagagacacagtctctcaccc 296
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tttaaaaagagagcgagagatgctaattgtttgtttatttagagacacagtctctcaccc 500
Query: 297 tgtagccttggttggcctggaactcaatatgtagaccaggctgggcttgaactcacagag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtagccttggttggcctggaactcaatatgtagaccaggctgggcttgaactcacagag 560
Query: 357 atctcctgagtgcaaagattaaagatgtgcaccaccacacccaacttatatttgtgtgtg 416
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 atctcctgagtgcaaagattaaagatgtacaccaccacacccaacttatatttgtgtgtg 620
Query: 417 tgtgtgtgtgtgtgtaaatgtgtgcctgtatgagttatatg 457
||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tgtgtgtgt------aaatgtgtgcctgtatgagttatatg 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
