BAC Information

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BAC

Clone NameMSMg01-394I03
Chromosome5 (Build37)
Map Location 96,598,057 - 96,801,172
singlet/doubletdoublet
Overlap geneLOC100040559, Mrpl1
Upstream geneLOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394I03.T7 (MSMg01no394_i03.b1)MSMg01-394I03.TJ (MSMg01no394_i03.g1)
ACCAG495548AG495549
length732735
length of high quality
(start - end)
606 (81 - 686)625 (84 - 708)
definitionCHROMAT_FILE: MSMg01no394_i03.b1 PHD_FILE: MSMg01no394_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:54 2005CHROMAT_FILE: MSMg01no394_i03.g1 PHD_FILE: MSMg01no394_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,800,574 - 96,801,172)(96,598,057 - 96,598,678)
sequence
TTTTNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAG
GATCCGCGGAATTCTATATTTTTCAAACAGTTTTTTTTTCATATGCCCAC
ATCCCGTAACTTTTGTTACCATATCCCACACTATCTTCTTCGATCAGCCC
CATCCTTGTCTCTTCAAATTCACCTGGCCTCACTGCTGCTCACCAGGTAG
ATATTATAGACTGAACACTTTGTATCTAACATGGGACCCTTTGCTATGTA
ATCTGCCAGTAACTATATGAGACATGTACCCTTGTTATTTTCATGGACAA
GTGCAGTGACTGATGGCCCTGAGTCATATTTTTAATTACAACAGCACATT
GAAACAAGCAGCATTACCTACTATGAGAGTCAGATGACCACATCTCAGTA
TCTTAACACAACAATTTGTCTGTCTATCCTGTCCCCTGGACAGTAGTGGA
CCCTACACCTTGTAACCTGGACACCCATGAGCCCTTCCTGTAGCCAGGCC
AACATGGCCCATATGAAACACCTTCCTCTTGTAGTCCAAGAATGAGCTGT
GTGCCCACCCGCCACGACCCCTTACCAGGAAGACAGTGACAGGGACACAT
AGGTCACACGTGGGGATTTAGTAAGTCCTCACCGTGCTGCTCTCACTGCT
CCTACTGCCTCAGCTTTCCTATGGACAGCAACACTCCAGCAGGACCGTCC
CTGCTGCCACCGGGGCTTTGCTGATCTTTGTN
NAAAATCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCATCTAAAGGGTTG
CTTGTACTTCAGAGGAAGAACTTCTAACTCATATACAAGGATGGGGCCTT
CTTCTGCTCAAAGACAGGAAAAGATACTTATGGAGGTTGCAATTCTAACT
ATCGAATTTATTTTCTTAACAATGCAAAAGTTTTTTTCCCCTGTAAGCAC
TTTCCTGAAAGGTCTGCCTAAAATATTTGCTTAGATTTCATTAGCCATAA
ACGTAATGAAAGGTCATTAAATACCTGAAAAGTGAGCTGAGAAAAGGTTT
CTGGTAAACACGTAAGTAAACCTCCAGGTAGCATAGGCGGGATCCACAAC
GCTGAATGGCTCAGGGTCCGGAGAAATAGAGGGAAGATGGCATATCTGAT
TTTATAACCAAAACTTTTTTTTAAGATTTATTTTATATATAAGTACACTG
TAGCTGTCTTCAGACACACCACAAGAAGTATCAGATCCCATTTCAGATGG
TTGTGAGCCACCATGTGGTGACTGGGAATCGAACCCAGGACCTCTGGAAG
AGCAGTCCACGCCCTTAACCGCTGAGCCACCTCTCCAGCCCCATAACCAA
AACTTTTAATGCTAGCAAAGCAAGCATCCTATTTAGACTATTTATACTAT
TTAGCATAAGCTCATCTAAATGAAAGAAGGCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_i03.b1 MSMg01no394_i03.b1 CHROMAT_FILE:
MSMg01no394_i03.b1 PHD_FILE: MSMg01no394_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:54 2005
         (606 letters)



>mm_chr5_96800372_96801372
          Length = 1001

 Score = 1060 bits (548), Expect = 0.0
 Identities = 588/604 (97%), Gaps = 5/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   tttttttcatatgcccacatcccgtaacttttgttaccatatcccacactatcttcttcg 62
           |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 801 tttttttcatatgcccacatcccgtaacttttgtcaccatatcccacagtatcttctttg 742

                                                                       
Query: 63  atcagccccatccttgtctcttcaaattcacctggcctcactgctgctcaccaggtagat 122
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 741 atcagccccatccttgtctcttcaaattcacctggcctcactgctgcttatcaggtagat 682

                                                                       
Query: 123 attatagactgaacactttgtatctaacatgggaccctttgctatgtaatctgccagtaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attatagactgaacactttgtatctaacatgggaccctttgctatgtaatctgccagtaa 622

                                                                       
Query: 183 ctatatgagacatgtacccttgttattttcatggacaagtgcagtgactgatggccctga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatatgagacatgtacccttgttattttcatggacaagtgcagtgactgatggccctga 562

                                                                       
Query: 243 gtcatatttttaattacaacagcacattgaaacaagcagcattacctactatgagagtca 302
           |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcagatggttaattacaacagcacattgaaacaagcagcattacctactatgagagtca 502

                                                                       
Query: 303 gatgaccacatctcagtatcttaacacaacaatttgtctgtctatcctgtcccctggaca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgaccacatctcagtatcttaacacaacaatttgtctgtctatcctgtcccctggaca 442

                                                                       
Query: 363 gtagtggaccctacaccttgtaacctggacacccatgagcccttcctgtagccaggccaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagtggaccctacaccttgtaacctggacacccatgagcccttcctgtagccaggccaa 382

                                                                       
Query: 423 catggcccatatgaaacaccttcctcttgtagtccaagaatgagctgtgtgcccacccgc 482
           |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 381 catggcccatatgaaacaccttcctct-----tccaagaatgagctgtgtgcccacccgc 327

                                                                       
Query: 483 cacgaccccttaccaggaagacagtgacagggacacataggtcacacgtggggatttagt 542
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 326 cacgaccccttaccaggaagacagtgacagggacacataggtcgcacgtggggatttagt 267

                                                                       
Query: 543 aagtcctcaccgtgctgctctcactgctcctactgcctcagctttcctatggacagcaac 602
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 266 aagtcctcaccgtgctgctctcactgctcatactgcctcagctttcctacggacagcaac 207

               
Query: 603 actc 606
           ||||
Sbjct: 206 actc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1001
Length adjustment: 10
Effective length of query: 596
Effective length of database: 991
Effective search space:   590636
Effective search space used:   590636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no394_i03.g1 MSMg01no394_i03.g1 CHROMAT_FILE:
MSMg01no394_i03.g1 PHD_FILE: MSMg01no394_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:55 2005
         (625 letters)



>mm_chr5_96597854_96598878
          Length = 1025

 Score = 1156 bits (598), Expect = 0.0
 Identities = 616/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   catctaaagggttgcttgtacttcagaggaagaacttctaactcatatacaaggatgggg 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catctaaggggttgcttgtacttcagaggaagaacttctaactcatatacaaggatgggg 263

                                                                       
Query: 64  ccttcttctgctcaaagacaggaaaagatacttatggaggttgcaattctaactatcgaa 123
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 ccttcttctgctcaaagacaggaaaagatacttatggaggttggaattctaactatcgaa 323

                                                                       
Query: 124 tttattttcttaacaatgcaaaagtttttttcccctgtaagcactttcctgaaaggtctg 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttattttcttgacaatgcaaaagtttttttcccctgtaagcactttcctgaaaggtctg 383

                                                                       
Query: 184 cctaaaatatttgcttagatttcattagccataaacgtaatgaaaggtcattaaatacct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctaaaatatttgcttagatttcattagccataaacgtaatgaaaggtcattaaatacct 443

                                                                       
Query: 244 gaaaagtgagctgagaaaaggtttctggtaaacacgtaagtaaacctccaggtagcatag 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaaagtgagctgagaaacggtttctggtaaacacgtaagtaaacctccaggtagcatag 503

                                                                       
Query: 304 gcgggatccacaacgctgaatggctcagggtccggagaaatagagggaagatggcatatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcgggatccacaacgctgaatggctcagggtccggagaaatagagggaagatggcatatc 563

                                                                       
Query: 364 tgattttataaccaaaacttttttttaagatttattttatatataagtacactgtagctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgattttataaccaaaacttttttttaagatttattttatatataagtacactgtagctg 623

                                                                       
Query: 424 tcttcagacacaccacaagaagtatcagatcccatttcagatggttgtgagccaccatgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcttcagacacaccacaagaagtatcagatcccatttcagatggttgtgagccaccatgt 683

                                                                       
Query: 484 ggtgactgggaatcgaacccaggacctctggaagagcagtccacgcccttaaccgctgag 543
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 684 ggtgactgggaatcgaacccaggacctctggaaaagcagtccatgcccttaaccgctgag 743

                                                                       
Query: 544 ccacctctccagccccataaccaaaacttttaatgctagcaaagcaagcatcctatttag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccacctctccagccccataaccaaaacttttaatgctagcaaagcaagcatcctatttag 803

                                 
Query: 604 actatttatactatttagcata 625
           ||||||||||||||||||||||
Sbjct: 804 actatttatactatttagcata 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)