Query= MSMg01no394_i03.b1 MSMg01no394_i03.b1 CHROMAT_FILE:
MSMg01no394_i03.b1 PHD_FILE: MSMg01no394_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:54 2005
(606 letters)
>mm_chr5_96800372_96801372
Length = 1001
Score = 1060 bits (548), Expect = 0.0
Identities = 588/604 (97%), Gaps = 5/604 (0%)
Strand = Plus / Minus
Query: 3 tttttttcatatgcccacatcccgtaacttttgttaccatatcccacactatcttcttcg 62
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 801 tttttttcatatgcccacatcccgtaacttttgtcaccatatcccacagtatcttctttg 742
Query: 63 atcagccccatccttgtctcttcaaattcacctggcctcactgctgctcaccaggtagat 122
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 741 atcagccccatccttgtctcttcaaattcacctggcctcactgctgcttatcaggtagat 682
Query: 123 attatagactgaacactttgtatctaacatgggaccctttgctatgtaatctgccagtaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attatagactgaacactttgtatctaacatgggaccctttgctatgtaatctgccagtaa 622
Query: 183 ctatatgagacatgtacccttgttattttcatggacaagtgcagtgactgatggccctga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatatgagacatgtacccttgttattttcatggacaagtgcagtgactgatggccctga 562
Query: 243 gtcatatttttaattacaacagcacattgaaacaagcagcattacctactatgagagtca 302
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcagatggttaattacaacagcacattgaaacaagcagcattacctactatgagagtca 502
Query: 303 gatgaccacatctcagtatcttaacacaacaatttgtctgtctatcctgtcccctggaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgaccacatctcagtatcttaacacaacaatttgtctgtctatcctgtcccctggaca 442
Query: 363 gtagtggaccctacaccttgtaacctggacacccatgagcccttcctgtagccaggccaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagtggaccctacaccttgtaacctggacacccatgagcccttcctgtagccaggccaa 382
Query: 423 catggcccatatgaaacaccttcctcttgtagtccaagaatgagctgtgtgcccacccgc 482
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 catggcccatatgaaacaccttcctct-----tccaagaatgagctgtgtgcccacccgc 327
Query: 483 cacgaccccttaccaggaagacagtgacagggacacataggtcacacgtggggatttagt 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 326 cacgaccccttaccaggaagacagtgacagggacacataggtcgcacgtggggatttagt 267
Query: 543 aagtcctcaccgtgctgctctcactgctcctactgcctcagctttcctatggacagcaac 602
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 266 aagtcctcaccgtgctgctctcactgctcatactgcctcagctttcctacggacagcaac 207
Query: 603 actc 606
||||
Sbjct: 206 actc 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1001
Length adjustment: 10
Effective length of query: 596
Effective length of database: 991
Effective search space: 590636
Effective search space used: 590636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_i03.g1 MSMg01no394_i03.g1 CHROMAT_FILE:
MSMg01no394_i03.g1 PHD_FILE: MSMg01no394_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:55 2005
(625 letters)
>mm_chr5_96597854_96598878
Length = 1025
Score = 1156 bits (598), Expect = 0.0
Identities = 616/622 (99%)
Strand = Plus / Plus
Query: 4 catctaaagggttgcttgtacttcagaggaagaacttctaactcatatacaaggatgggg 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catctaaggggttgcttgtacttcagaggaagaacttctaactcatatacaaggatgggg 263
Query: 64 ccttcttctgctcaaagacaggaaaagatacttatggaggttgcaattctaactatcgaa 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 ccttcttctgctcaaagacaggaaaagatacttatggaggttggaattctaactatcgaa 323
Query: 124 tttattttcttaacaatgcaaaagtttttttcccctgtaagcactttcctgaaaggtctg 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttattttcttgacaatgcaaaagtttttttcccctgtaagcactttcctgaaaggtctg 383
Query: 184 cctaaaatatttgcttagatttcattagccataaacgtaatgaaaggtcattaaatacct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctaaaatatttgcttagatttcattagccataaacgtaatgaaaggtcattaaatacct 443
Query: 244 gaaaagtgagctgagaaaaggtttctggtaaacacgtaagtaaacctccaggtagcatag 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaaagtgagctgagaaacggtttctggtaaacacgtaagtaaacctccaggtagcatag 503
Query: 304 gcgggatccacaacgctgaatggctcagggtccggagaaatagagggaagatggcatatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcgggatccacaacgctgaatggctcagggtccggagaaatagagggaagatggcatatc 563
Query: 364 tgattttataaccaaaacttttttttaagatttattttatatataagtacactgtagctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgattttataaccaaaacttttttttaagatttattttatatataagtacactgtagctg 623
Query: 424 tcttcagacacaccacaagaagtatcagatcccatttcagatggttgtgagccaccatgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcttcagacacaccacaagaagtatcagatcccatttcagatggttgtgagccaccatgt 683
Query: 484 ggtgactgggaatcgaacccaggacctctggaagagcagtccacgcccttaaccgctgag 543
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 684 ggtgactgggaatcgaacccaggacctctggaaaagcagtccatgcccttaaccgctgag 743
Query: 544 ccacctctccagccccataaccaaaacttttaatgctagcaaagcaagcatcctatttag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccacctctccagccccataaccaaaacttttaatgctagcaaagcaagcatcctatttag 803
Query: 604 actatttatactatttagcata 625
||||||||||||||||||||||
Sbjct: 804 actatttatactatttagcata 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|