BAC Information

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BAC

Clone NameMSMg01-394O02
Chromosome5 (Build37)
Map Location 60,609,175 - 60,609,577
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041425, LOC546866
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394O02.T7 (MSMg01no394_o02.b1)MSMg01-394O02.TJ (MSMg01no394_o02.g1)
ACCAG495832AG495833
length780753
length of high quality
(start - end)
357 (81 - 437)518 (82 - 599)
definitionCHROMAT_FILE: MSMg01no394_o02.b1 PHD_FILE: MSMg01no394_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:25 2005CHROMAT_FILE: MSMg01no394_o02.g1 PHD_FILE: MSMg01no394_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTACTCTCATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG
CGCGGAATTCAGTAATTTCCATGACTATTCAGTGACATTCAGAATTACCT
CTAGTGTTGTAAGAGAGATAGTGAAACAAATCAGGCTTTACTATCTACTA
CATAGAGTTAGAAATCCCAGGGCAAGCTTAGCAAAGTAAGCTTAGAATTC
TTATTATAGTTATGTATGGCTGACTACATTACTTATTAGTAGAAAGTCCC
CCACACAATCACTTAGAACGAAAGCCGAGTCACTCCCATACACAGGAATT
TACAATGGTTTAGGTAGTAGATCATTTTGTGGTTTAAGGAGGAACTAGAG
TATTGCACTATTCGTGGGAAGGTTAGCTAGAGCAAACTCCCTAATTAGAA
CCATGGCTTGGGCATGACAGCCCTTGTGCCTGGAGTGTAAAGACCTCACA
CCTGGCTCCTAAGAATATTGCTGACCTTACAGCTGAATTCGTCGTATTTG
CTTTATGGCCCAGGTCCCGTCCGTCCTTATGTCCGCTTTCCTCTGCTTCG
TGTATGAGTCATCACCCTCCCCTTATCCCACCGTTCCCCGCCTCATCGTG
TCTTCTACTTCTCGCTCTTTTTCTCTTGCCTTACCTACTCCGCTTCGCTT
GCCCTTGCCCTATTCCGTCCCCCCTTCCGCCCTTTTCCCCCTCTTCCCCG
TTCTCCCGTTTCCGCGCCATTCGTCTCTACCCTCGCCTGTCCTTACTCGT
CCCTTTTTCTCCGCCGCATCTATCGTTCGG
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAATTTTCACTTAGTGAA
ACTCTGCCAAGTCTAATAACTACTTCACAAATGGAAACAAATTTTGTTTT
CTTCTATGGTTAGAATTCCAATTTCTAAATCATTAATTTTTCACAAAGTA
ATTAGCTTACCGATGCTCAGTACTTGTTAACACTTTGCTGCCACAGATCT
AGGTTCATGTCCCAGCACAGACATGGTGGCTTAAGACCACCTTGAATATC
ACTTCCAAGGGACAGATCTTCCTTGGATGTTAGGTACATATGTGGTATAC
ATATTTTTATTTATTCAGATTAAAAAACACGTAAGAATAAACACAACTTT
TAAAAATTAAAAAGAATATTGATTGAACAGTAGACTTTGGGGAGAAGTGA
ACATTTAAATAAAAGTATGGCAGGGAAAGAATAAACAAATTTGCATCTAC
CTTTTTTCCCCTACTTGTAGCACATATTGATTTTGATCTCTATAGTAGTA
AAGGTAGAACACACAAGAAACTGTATTTGATCTACAGTCCTCCAGAAGAT
ACTCANAAAGAGGTATAGAAAACTGATAAAATTTACAGACATTTATTTAA
ACCCAGAATCCATGTCAGAGTATTTTAGGAGAGGGGAAAAAAAAAGAGGC
CATTTTAGTAATAACTTTGTAAAACCAGCCAAAGTATAGATCCTAAGCCT
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_o02.g1 MSMg01no394_o02.g1 CHROMAT_FILE:
MSMg01no394_o02.g1 PHD_FILE: MSMg01no394_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:25 2005
         (518 letters)



>mm_chr5_60608660_60609577
          Length = 918

 Score =  772 bits (399), Expect = 0.0
 Identities = 402/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 116 agtaattagcttaccgatgctcagtacttgttaacactttgctgccacagatctaggttc 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 agtaattagcttaccgatgctcagtacttgttaacactttgctgccacagatctaggttc 859

                                                                       
Query: 176 atgtcccagcacagacatggtggcttaagaccaccttgaatatcacttccaagggacaga 235
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 858 atgtcccagcacagacatggtggcttaagaccacctggaatatcacttccaagggacaga 799

                                                                       
Query: 236 tcttccttggatgttaggtacatatgtggtatacatatttttatttattcagattaaaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tcttccttggatgttaggtacatatgtggtatacatatttttatttattcagattaaaaa 739

                                                                       
Query: 296 acacgtaagaataaacacaacttttaaaaattaaaaagaatattgattgaacagtagact 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 acacgtaagaataaacacaacttttaaaaattaaaaagaatattgattgaacagtagact 679

                                                                       
Query: 356 ttggggagaagtgaacatttaaataaaagtatggcagggaaagaataaacaaatttgcat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttggggagaagtgaacatttaaataaaagtatggcagggaaagaataaacaaatttgcat 619

                                                                       
Query: 416 ctaccttttttcccctacttgtagcacatattgattttgatctctatagtagtaaaggta 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctaccttttttcccctacttgtagcacatattgattttgatctctatagtagtaaaggta 559

                                                      
Query: 476 gaacacacaagaaactgtatttgatctacagtcctccagaaga 518
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaacacacaagaaactgtatttgatctacagtcctccagaaga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)