BAC Information

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BAC

Clone NameMSMg01-395A14
Chromosome5 (Build37)5 (Build37)
Map Location 143,152,737 - 143,153,077143,563,886 - 143,564,225
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2
Downstream geneSlc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395A14.T7 (MSMg01no395_a14.b1)MSMg01-395A14.TJ (MSMg01no395_a14.g1)
ACCAG495950AG495951
length769752
length of high quality
(start - end)
344 (71 - 414)340 (76 - 415)
definitionCHROMAT_FILE: MSMg01no395_a14.b1 PHD_FILE: MSMg01no395_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:44 2005CHROMAT_FILE: MSMg01no395_a14.g1 PHD_FILE: MSMg01no395_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:44 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,152,737 - 143,153,077)(143,563,886 - 143,564,225)
sequence
NCCAAAGTCTAATGTCANNNNNNNNNNNNTTTCCCAAGAGATCCGCGNNA
TTCCAGTTTCCCCAACAGGGTCAGCCTCTGCTACATAGTGAGTTCAAGGC
CAGCGTGGGTTAACATGTTGGAGGTGACAAAATGGGCCTGGAGGTTAAGA
AAAAGTAGGGGCAGAACTAAAAATCTATCCAAAAACTGCCATCCACAGAG
CTGACTCGGCTCAGTACCACAGTGTGTATCTTCCGGTTAACTTTCCTGTC
AAAAGCAGATGCATAAACTGATTTCCTAACCACGTGTGCCTCCACAGCAG
TTTCTGTCCCCTGTATTATTGATGAATCTTTATTTTTACAGCCAACCCCC
TCCCCCACTGGAATTTGCTCTTCAATAAATATATATGTGTACTGGATAAA
AGGTCTAAACCCAGGTGTGGCGTACACACCTGATACCTCAGCACTCGTAT
AGCGCAATTATAGGAGGATCATACATTCACGTTTATCTCTTGGCTACTTA
ACCCTGACGCTAGTCTGGGCTACCCAATGTTGTTTCATAACAGAATAGAT
TGTGTGAATGATTGCCCGAACGATTTGACTGATTTAATGATCCCATTTCT
TTTTCTACCCGCTTCTTTCCTTCCCTCTATCTCTTCACACGTTTCTTAAT
GCCTTATCTCTCCCCCCTTTTTCTCCCTCCATTTCCCTCTTTTATTTCCT
TCTTCCCCCTTTATTTCCCCCCTTCCCTCATTTCGACTCGTTCCACACCA
CTTATTCCATGCTTATATT
CCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTAATTTAAGCGGACTATTGTTAC
TGTTTGAGATATGACCATATCTCTTTGTGGCCTAGGCTGGCCTCAGGCTT
AAAGTTTAGCCTCTGTAGGTGAGGCTGACCTTGGTCTTCCTCCATCTGGA
GCTACTACCTCAGCCTGGGGGGCAGAGCTGGGATGAGGGAAGAGGGCCCC
TCCATCGTCCCATGAATTCCAGCCTCATCTCTGTTAGCAAAGGGCTTGTG
GGAGACTCTGATTTTTTCCCTAGTGAAAACAGCTCCCCAGGTATAGCAGG
ACAGCTTGCTTGGCTTGCAAGATGCCTTGTTCCGTCCCCAGCACTGCAGA
CAAACCAAACCAACCCCTCCCCCCCACAATCAGCTGGCACTTGAGCACCT
CCCTGCCCTCTGGCCTTTAGAGATACCAGGGTTTCTAAATTGTAGGTACC
AGAAATATTCTAATTTGACCGTCTTATCCGTTTGCGCTGAGATTGGATCC
CCCTCATTGCCGTTTGTCCCCTTTTCCTTGTCCTTCCCCCCGGCTCTGCC
GTTCATGTGCCTGTCGTTCCTCCCTTGTTTCCCCACTCCTTTTTTTCCTT
TTCGTTTTTACTTTTTCCCCCTTTTTTCCTTTTCCCTTTTTCTATTTCTC
TCTTTGTCCTTTCTCTCCTTTGCTATTTCTCCCCTTCTTTTTTTCTTTCT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_a14.b1 MSMg01no395_a14.b1 CHROMAT_FILE:
MSMg01no395_a14.b1 PHD_FILE: MSMg01no395_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:44 2005
         (344 letters)



>mm_chr5_143152537_143153280
          Length = 744

 Score =  629 bits (325), Expect = 0.0
 Identities = 337/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcctctgctacatagtgagttcaaggccagcgtgggttaacatgttggaggtgacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tcagcctctgctacatagtgagttcaaggccagcgtgggttaacatgtcggaggtgacaa 260

                                                                       
Query: 61  aatgggcctggaggttaagaaaaagtaggggcagaactaaaaatctatccaaaaactgcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgggcctggaggttaaaaaaaagtaggggcagaactaaaaatctatccaaaaactgcc 320

                                                                       
Query: 121 atccacagagctgactcggctcagtaccacagtgtgtatcttccggttaactttcctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccacagagctgactcggctcagtaccacagtgtgtatcttccggttaactttcctgtc 380

                                                                       
Query: 181 aaaagcagatgcataaactgatttcctaaccacgtgtgcctccacagcagtttctgtccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagcagatgcataaactgatttcctaaccacgtgtgcctccacagcagtttctgtccc 440

                                                                       
Query: 241 ctgtattattgatgaatctttatttttacagccaaccccctcccccactggaatttgctc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcattattgatgaatctttatttttacagccaaccccctcccccactggaatttgctc 500

                                                    
Query: 301 ttcaataaatatatatgtgtactggataaaaggtctaaacc 341
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ttcaataaatatatatgtgtactggataaaaggcctaaacc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no395_a14.g1 MSMg01no395_a14.g1 CHROMAT_FILE:
MSMg01no395_a14.g1 PHD_FILE: MSMg01no395_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:44 2005
         (340 letters)



>mm_chr5_143563686_143564425
          Length = 740

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaatttaagcggactattgttactgtttgagatatgaccatatctctttgtggcctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 actaatttaagcggactattgttactgtttgagatatgaccatatctctttgtggcctag 481

                                                                       
Query: 61  gctggcctcaggcttaaagtttagcctctgtaggtgaggctgaccttggtcttcctccat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 gctggcctcaggcttaaagtttagcctctgtaggtgaggctaaccttggtcttcctccat 421

                                                                       
Query: 121 ctggagctactacctcagcctggggggcagagctgggatgagggaagagggcccctccat 180
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctggagctactgcctcagcctgaggggcagagctgggatgagggaagagggcccctccat 361

                                                                       
Query: 181 cgtcccatgaattccagcctcatctctgttagcaaagggcttgtgggagactctgatttt 240
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 360 cgccccatgaattccagcctcatctctgttagcaaagggcttgtgggagactctgaattc 301

                                                                       
Query: 241 ttccctagtgaaaacagctccccaggtatagcaggacagcttgcttggcttgcaagatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttccctagtgaaaacagctccccaggtatagcaggacagcttgcttggcttgcaagatgc 241

                                                   
Query: 301 cttgttccgtccccagcactgcagacaaaccaaaccaacc 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttgttccgtccccagcactgcagacaaaccaaaccaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)