BAC Information

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BAC

Clone NameMSMg01-395A19
Chromosome5 (Build37)
Map Location 108,205,301 - 108,379,545
singlet/doubletdoublet
Overlap geneEvi5, 1700013N18Rik, Rpl5, 2900024C23Rik
Upstream geneEG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473
Downstream geneLOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395A19.T7 (MSMg01no395_a19.b1)MSMg01-395A19.TJ (MSMg01no395_a19.g1)
ACCAG495960AG495961
length807780
length of high quality
(start - end)		387 (65 - 451)457 (73 - 529)
definitionCHROMAT_FILE: MSMg01no395_a19.b1 PHD_FILE: MSMg01no395_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:45 2005CHROMAT_FILE: MSMg01no395_a19.g1 PHD_FILE: MSMg01no395_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,205,301 - 108,205,685)(108,379,089 - 108,379,545)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCACTCTACCCAAGACATAAGGATTTTGAATCCAAAGCCAGCCTGGG
CTATACAAGACCATGTCTCAAAGGAGAATGAGGTCTTCAGTGTGCACACT
TGCAGCAGTTTACTAGCATCATGTCAGCATGCATTTTACAGTGCACGATG
TGCTGGCCACTCTGACGTTTGCTTTCCAGATTACATATATGTGCTGGCTA
CTGAGTCCACTGGCTCTCCCCTTCCTGAGTTTTCTTCAGATACCTGACAT
ACAAGCAAAATTTTCACCTAAAACATGGTTTTTAAATTTTTATAGGAAGA
GGACCTTGGTCCTGTGAAAGTTATATGTCCCAGTATAGGGAACTGACAGG
GCCAGAAAGCAGGAGTGGGTGGGTTGGTGAGCAGGGGGAGAGAGGAAGGC
ATACGTGTCCTCCCTTCCTTTCTCTTTTCCCCTTCCCCCTTTTTTTTCTT
CCCTCCTTCTCTTCCTTCTTTTTTTCCCTTCCTTTTCTCTCCCTTCCCCC
CTTCTTTTCCTCCTTTTTTTTTCCCCCCTCCNNNCCCCCTCCCTCTCCCC
CCTTCCTTTTTTTTTCCCCCTTTCTTTTTTTTTCTCTTTCTCCCCTCCCC
TTCCCCCCCCCTCTTTTTCTCTCTTTTTTTTTTTTTTCCCCCCCTTTCTT
TTTTCCCCTTTTTTTTCCTCCCCTTTCCTCCTTTCTTCCTTCTCTCTTTC
TCCCCCCCCCCTTTTTTTTTTCCTTTTTCCCTTCTCCCCCTCTCTTTTTT
TTCCCCC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGACCGTTTCCTCCAGGACATTATTTT
CAAAATCCTCTACTCTTTGTTACCTCCAACTACACAAATCTCTTTAGAGA
TCCTGCCCTGAACCTGGTTTTAATCATGTGTTGCCGTAAGTATGCTTTTT
ACATGCTATCTGGACTTTAAGCTCTTTGAAGGAAAGGCTATGTCTCATGC
AGAGTCTCAGACTGAGCACCTAATGCTATTTGAGCCCTAATAGATTTGGC
TCAAATAATACATTCTTTTGATTGACATCAGTCTTCTTCAGATAAGAATT
TTGTGCTGAATTGTTTAATACTTTTGTATTTTAAAGGTTGGTGTTTAATC
AGTTTATCAAACTTTTGGTGAGTTCCTATGTGTGTTAATTGTATGGATAT
ATGTAAATGAATAGCTTCCCTTCAGAGGTCTTGCTATTTCCTCAGGTCTT
CCTCTGAACTGGGTACTTTTAACTACCTGCCTGATACGGTCTAGAATTAA
CTCTGAGGAGAATGACTGCCTTGATGGTTACTTGATGTTGGGAGACCTCA
TTCTTTGTGGTGGTACACTTTTATGGGCTAACTCTACAGTGGATTATAAA
AAAGCCAGTTTCCTGAAAATAATCATAATTACCCACCCCCCTTGGGCCTT
TTCCCTCTGTTTTGATGTTACTGTGTGGTACCAACCCGTACCCCCCCTTT
TTCGATTCTCTCCCTTTTCCTTCACCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_a19.b1 MSMg01no395_a19.b1 CHROMAT_FILE:
MSMg01no395_a19.b1 PHD_FILE: MSMg01no395_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:45 2005
         (387 letters)



>mm_chr5_108205101_108205887
          Length = 787

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacataaggattttgaatccaaagccagcctgggctatacaagaccatgtctcaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacataaggattttgaatccaaagccagcctgggctatacaagaccatgtctcaaagg 260

                                                                       
Query: 61  agaatgaggtcttcagtgtgcacacttgcagcagtttactagcatcatgtcagcatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatgaggtcttcagtgtgcacacttgcagcagtttactagcatcatgtcagcatgcat 320

                                                                       
Query: 121 tttacagtgcacgatgtgctggccactctgacgtttgctttccagattacatatatgtgc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctacagtgcacgatgtgctggccactctgacgtttgctttccagattacatatatgtgc 380

                                                                       
Query: 181 tggctactgagtccactggctctccccttcctgagttttcttcagatacctgacatacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctactgagtccactggctctccccttcctgagttttcttcagatacctgacatacaa 440

                                                                       
Query: 241 gcaaaattttcacctaaaacatggtttttaaatttttataggaagaggaccttggtcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaaattttcacctaaaacatggtttttaaatttttataggaagaggaccttggtcctg 500

                                                                       
Query: 301 tgaaagttatatgtcccagtatagggaactgacagggccagaaagcaggagtgggtgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaagttatatgtcccagtatagggaactgacagggccagaaagcaggagtgggtgggt 560

                                    
Query: 361 tggtgagcagggggagagaggaagg 385
           |||||||||||||||||||||||||
Sbjct: 561 tggtgagcagggggagagaggaagg 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no395_a19.g1 MSMg01no395_a19.g1 CHROMAT_FILE:
MSMg01no395_a19.g1 PHD_FILE: MSMg01no395_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:45 2005
         (457 letters)



>mm_chr5_108378889_108379745
          Length = 857

 Score =  876 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaccgtttcctccaggacattattttcaaaatcctctactctttgttacctccaacta 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 atgaccgtctcctccaggacattattttcaaaatcctctactctttgttacctccaacta 598

                                                                       
Query: 61  cacaaatctctttagagatcctgccctgaacctggttttaatcatgtgttgccgtaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cacaaatctctttagagatcctgccctgaacctggttttaatcatgtgttgccgtaagta 538

                                                                       
Query: 121 tgctttttacatgctatctggactttaagctctttgaaggaaaggctatgtctcatgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgctttttacatgctatctggactttaagctctttgaaggaaaggctatgtctcatgcag 478

                                                                       
Query: 181 agtctcagactgagcacctaatgctatttgagccctaatagatttggctcaaataataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agtctcagactgagcacctaatgctatttgagccctaatagatttggctcaaataataca 418

                                                                       
Query: 241 ttcttttgattgacatcagtcttcttcagataagaattttgtgctgaattgtttaatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttcttttgattgacatcagtcttcttcagataagaattttgtgctgaattgtttaatact 358

                                                                       
Query: 301 tttgtattttaaaggttggtgtttaatcagtttatcaaacttttggtgagttcctatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttgtattttaaaggttggtgtttaatcagtttatcaaacttttggtgagttcctatgtg 298

                                                                       
Query: 361 tgttaattgtatggatatatgtaaatgaatagcttcccttcagaggtcttgctatttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgttaattgtatggatatatgtaaatgaatagcttcccttcagaggtcttgctatttcct 238

                                                
Query: 421 caggtcttcctctgaactgggtacttttaactacctg 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 caggtcttcctctgaactgggtacttttaactacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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