BAC Information

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BAC

Clone NameMSMg01-395F11
Chromosome5 (Build37)
Map Location 87,829,610 - 87,829,850
singlet/doubletsinglet
Overlap genenone
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395F11.T7 (MSMg01no395_f11.b1)MSMg01-395F11.TJ (MSMg01no395_f11.g1)
ACCAG496182AG496183
length764781
length of high quality
(start - end)
427 (67 - 493)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no395_f11.b1 PHD_FILE: MSMg01no395_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:09 2005CHROMAT_FILE: MSMg01no395_f11.g1 PHD_FILE: MSMg01no395_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACGCTTACTCACTGCTCATCTCAGGGCTTAGTATTGAGGTGATG
GTCGAGCAACTAATCAGGTGCTGTAACTCCACATCAGGTGCTGAAACGTC
ACGCTGAGGGCTATATAAGCAGCACCATTTTCCGGGTTTGGGGTCTTCCT
TATGTTGAAGCAATAAAAGCTTTGCTGTAGAAGGATCCAGTTGTCCGAGT
GAATTGTTGCTGGAGAGATACTAGCTTGGGCAAGAAGTGGCACAGAAACC
CGGGATTTATCATCATCAGGCGCTGATAGGAGACCCCCCCCCACCCCCCG
TTTCACGGGGCGGGTTCAGAACTAAGGGTAACTTTACAGCTCTGCAAGGT
ACACTCGGTCTTGAACTTTCTCCAACGTTAGAAGCCTTTCTGTTCCTTTT
CACAGGGGTCGGTCTTTTTCTTTTGATTGCATACTGTTTCCACTGGTAGA
ATTGCTAACTGGTGTTCAGAGGAGGTCAGGCATGGCTAGAAAAAAAACAA
GAATATAGCATGTGGGCCTGCCACCCTGTGGTGACCGCCTTACTGTCGTC
CCTGAAGCAGTCCGGTTGAAAGTCCCCCCCGGAAATAAAAAGGTTTTGAA
AAAAGGAGAATCGATAATCCCCGGGTTTGCTGCTCCGGACCTTTACCCAC
ACCCCCCCGGTATAATCTTGCGGAAATTATTTTTCCCACTGTGATATAGG
GTGTTTTTCCCCGG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCTAGAGTACTAACTGGC
TAACTAAGAAAAGGAGAAAAATGAACCTATCTTTCTGACTTACCTTGTCA
GTATTTGTAGAAGAAATATCTAAAGGAAATGTAGAGATGGGTACTGCCCT
TATGATCATCATTATGCAAAAGAAAACAAGAATCACAGGACTCTGCTTCT
AATCAGTCAGAGTGAAAATCCTACCATTCAAGGAAGAAATAAAATATGAG
TCAAAGAGATTCTGATGTGATTTTTAGTCAGATGAATTACTTCATACAGA
ACACCAAAAGTAGTTTTCTAGATATTGTTTTTGAATATTTATTTAGTTGA
AAACCATCTCCTTAATCACCTACAATTTTTTAAAATGATCCTTAATTGTA
TCAGTCTCAAAGGAAGTTTATTGTAGACATATAGATAATGATCTTTTTAT
GAGATTGGTCTGAGAATTCTAGCATTAGCACCATGGGCTGGTAAAGCATC
ATCAGCCTGGGGTTGGAAACTGTTTTTTCTTAGCAGAAAATTCTGACTTC
TAGAGTAAAGTCTTTGAACTTTGTCTAAGAACTACTTACCCACCTAGGTC
TTTAAGTATTGTGTTAAATTTTTTGAAGATTTTTTTTTCCAAAACCCATT
CACCTTGGGATTTTCCAATTTGTGTTTCTAAAACGGGGAAAAAAAGGGTT
TTTTGCAAGAATCTATCCCCCTCCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_f11.g1 MSMg01no395_f11.g1 CHROMAT_FILE:
MSMg01no395_f11.g1 PHD_FILE: MSMg01no395_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:09 2005
         (241 letters)



>mm_chr5_87829410_87830050
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggctagagtactaactggctaactaagaaaaggagaaaaatgaacctatctttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggctagagtactaactggctaactaagaaaaggagaaaaatgaacctatctttctga 382

                                                                       
Query: 61  cttaccttgtcagtatttgtagaagaaatatctaaaggaaatgtagagatgggtactgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaccttgtcagtatttgtagaagaaatatctaaaggaaatgtagagatgggtactgcc 322

                                                                       
Query: 121 cttatgatcatcattatgcaaaagaaaacaagaatcacaggactctgcttctaatcagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatgatcatcattatgcaaaagaaaacaagaatcacaggactctgcttctaatcagtc 262

                                                                       
Query: 181 agagtgaaaatcctaccattcaaggaagaaataaaatatgagtcaaagagattctgatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagtgaaaatcctaccattcaaggaagaaataaaatatgagtcaaagagattctgatgt 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)