BAC Information

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BAC

Clone NameMSMg01-395J22
Chromosome5 (Build37)
Map Location 45,170,336 - 45,313,176
singlet/doubletdoublet
Overlap geneLdb2
Upstream geneFbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395J22.T7 (MSMg01no395_j22.b1)MSMg01-395J22.TJ (MSMg01no395_j22.g1)
ACCAG496395AG496396
length766787
length of high quality
(start - end)		550 (42 - 591)479 (71 - 549)
definitionCHROMAT_FILE: MSMg01no395_j22.b1 PHD_FILE: MSMg01no395_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:31 2005CHROMAT_FILE: MSMg01no395_j22.g1 PHD_FILE: MSMg01no395_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,170,336 - 45,170,879)(45,312,742 - 45,313,176)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCAATTTGCTTTCCTAATTCCATCACAAATCTCTAGGTATATTAGAGGA
AAGGCATTAGACTGGTAATGGTAACTAATGGTAATCAGCAAACAACAGGC
TATTTCCAGAAACAACTACTTCTATTGATCCTCAGTAAACGAATGTTCCG
TCCATTGTACCAGCTTTTTTAGCTATAGAGTCAATGACTGTTTCTCAATG
TGGAAATAGTAGAGTGCTTTATTCATTCAATATACCTTCAGCTCTGTTGT
CTCCATTTATATTTAGCATTATTCTAGTAAGAAAAACAGGCCAGGCATGG
ATGAAAAATAATGACAAGGCCATGCTTTGGAGACTACTTCCAACCCAGGG
TGAACATGTAACTTTTAGCGGGAGCTTCTTGTGGCTCCTTGCAAATCAAC
CTCCTCATTCTCATTCCCAGTTCCAGCTGTCTTTGCATCTTGAGACTCTA
GCACAGTTCCTGTGCGTGAGATAAACACTCACTCTCTAGCTACCATAAAC
CCTCTTCTACTCCTGGCTTATCTCGATATAGAAATTGAGATAGTCTCAGT
TGGAAGCCATCTAAAGCTATCTGTCATTGTTTGCTGCAGATATTTTTAAG
TTATTTTGTTTCTGTGAGAAAAAATGCACGTGCTCTGGCACACTTGTGGA
AGCAGAAGACAATTATGGGAACCGGTCCCCCTTCCCCCAAGTGGGCCTTA
CGATTTGAATCACCCC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTTTTGCTTTGGAGCAGTGTGCTGTCCT
GAAGGACACGTATAGTGAGCAAGGATTTTAGTTCAAAATCGGGAGCTTTC
ATTCAAAATGCCCTTTCAGTCACTGAGCTACCCTGTAGAGACCAGACTGA
AGGCTGGAAGTGAACTCAGTTGGGAAGTACACACCTAGCATTATAGAGTC
CTGGGATCCACCACGAGTGCTGAAAATAAGATGCAAAAAATTAATAAAAG
CTGACTGTATTGGTTAAGTTTTCTCATGGATGAGACCAAACACCATCAAT
AATCAACTGAAGGGAGCAAGGGTGTATTGTGGCTCTCAGTTCAGAGGAAC
AAAGTCCATCATGGTGGAGAAGGCAAGGCAGAACAGCTTAGTCCTTGGCA
CCAAGAAGCAGACAATGTGCACCCCAGGGCTCATTTGGCTTGCTCCTGTC
TCCTTTTTTTTTTTTTTTTTAAATTCTGATTATGGGATGGAGCGACCCAC
TTTCAGGCAGAATCTTCTTCAGNTTTCCTGTCTGAAAAGCCTTCGAATTC
TCACACAAAGGCGTGCATCATTAAAACTGTATGTTCTTTAAACTTTCCCT
TTTGGCATTTAAATATGAACCCGGGGCCCACTTGGATGTAAGGAAACTAC
CCCCCGGGGCCCGGCTTCTTCCTCTTATTCCGGCTTTATTTACCTCAAAT
TTTGTCTTCCCAATTGTTAGCCATCCCCTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_j22.b1 MSMg01no395_j22.b1 CHROMAT_FILE:
MSMg01no395_j22.b1 PHD_FILE: MSMg01no395_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:31 2005
         (550 letters)



>mm_chr5_45170130_45171079
          Length = 950

 Score =  967 bits (500), Expect = 0.0
 Identities = 533/544 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaatttgctttcctaattccatcacaaatctctaggtatattagaggaaaggcat 66
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaatttgcatagctaattccatcacaaatctctaggtatattagaggaaaggcat 266

                                                                       
Query: 67  tagactggtaatggtaactaatggtaatcagcaaacaacaggctatttccagaaacaact 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tagactggtaatggtaactaatggtaatcagcaaacaacaggctatttccagaaacaact 326

                                                                       
Query: 127 acttctattgatcctcagtaaacgaatgttccgtccattgtaccagcttttttagctata 186
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 327 acttctattgatcctcagtaaacgaatgttctgcccattgtaccagcttttttagctata 386

                                                                       
Query: 187 gagtcaatgactgtttctcaatgtggaaatagtagagtgctttattcattcaatatacct 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 387 gagtcaatgactgtttctcaatgtggaaatagtagagtgctttattcattcagtatacct 446

                                                                       
Query: 247 tcagctctgttgtctccatttatatttagcattattctagtaagaaaaacaggccaggca 306
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 447 tcagctctgttgtctccatttatatttagcattaacctagtaagaaaaacaggccaggca 506

                                                                       
Query: 307 tggatgaaaaataatgacaaggccatgctttggagactacttccaacccagggtgaacat 366
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tggatgaaaaataataacaaggccatgctttggagactacttccaacccagggtgaacat 566

                                                                       
Query: 367 gtaacttttagcgggagcttcttgtggctccttgcaaatcaacctcctcattctcattcc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtaacttttagcgggagcttcttgtggctccttgcaaatcaacctcctcattctcattcc 626

                                                                       
Query: 427 cagttccagctgtctttgcatcttgagactctagcacagttcctgtgcgtgagataaaca 486
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cggttccagctgtctttgcatcttgagactctagcacagttcctgtgcgtgagataaaca 686

                                                                       
Query: 487 ctcactctctagctaccataaaccctcttctactcctggcttatctcgatatagaaattg 546
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 687 ctcactctctagctaccataaaccctcttctactcctggcttatctcaatatagaaattg 746

               
Query: 547 agat 550
           ||||
Sbjct: 747 agat 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no395_j22.g1 MSMg01no395_j22.g1 CHROMAT_FILE:
MSMg01no395_j22.g1 PHD_FILE: MSMg01no395_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:31 2005
         (479 letters)



>mm_chr5_45312742_45313620
          Length = 879

 Score =  795 bits (411), Expect = 0.0
 Identities = 429/435 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttttgctttggagcagtgtgctgtcctgaaggacacgtatagtgagcaaggatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cacttttgctttggagcagtgtgctgtcctgaaggacacgtatagtgagcaaggatttta 376

                                                                       
Query: 61  gttcaaaatcgggagctttcattcaaaatgccctttcagtcactgagctaccctgtagag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 375 gttcaaaatcgggagccttcattcaaaatgccctttcagtcactgagctgccctgtagag 316

                                                                       
Query: 121 accagactgaaggctggaagtgaactcagttgggaagtacacacctagcattatagagtc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 315 accagactgaaggctggaagggaactcagttgggaagtacacacctagcatgatagagtc 256

                                                                       
Query: 181 ctgggatccaccacgagtgctgaaaataagatgcaaaaaattaataaaagctgactgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgggatccaccacgagtgctgaaaataagatgcaaaaaattaataaaagctgactgtat 196

                                                                       
Query: 241 tggttaagttttctcatggatgagaccaaacaccatcaataatcaactgaagggagcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tggttaagttttctcatggatgagaccaaacaccatcaataatcaactgaagggagcaag 136

                                                                       
Query: 301 ggtgtattgtggctctcagttcagaggaacaaagtccatcatggtggagaaggcaaggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggtgtattgtggctctcagttcagaggaacaaagtccatcatggtggagaaggcaaggca 76

                                                                       
Query: 361 gaacagcttagtccttggcaccaagaagcagacaatgtgcaccccagggctcatttggct 420
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75  gaacagcttagcccttggcaccaagaagcagacaatgtgcatcccagggctcatttggct 16

                          
Query: 421 tgctcctgtctcctt 435
           |||||||||||||||
Sbjct: 15  tgctcctgtctcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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