Query= MSMg01no396_c01.b1 MSMg01no396_c01.b1 CHROMAT_FILE:
MSMg01no396_c01.b1 PHD_FILE: MSMg01no396_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:11 2005
(437 letters)
>mm_chr5_141452859_141453695
Length = 837
Score = 727 bits (376), Expect = 0.0
Identities = 418/432 (96%)
Strand = Plus / Minus
Query: 6 cggtgtgtttaaggtctgtcctttggatgacgatggccagttcttcaagtaccatttact 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cggtgtgtttaaggtctgtcctttggatgacgatggccagttcttcaagtaccatttact 776
Query: 66 gaaaacctgtccttctctctgctggattgcctttgagcctttgtgaaaattctgttagcc 125
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 775 gaaaacctgtccttctctctgctggattgtctttgggcctttgtgaaaattctgttagcc 716
Query: 126 acgtgtgtttctagagatatttctgtgcatggtgctgtcccctgacctgtgtgtctgtcc 185
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 acatgtgtttctagagatatttctgtgcatggtgctgtcccctgacctgtgtgtctgtcc 656
Query: 186 tttcactggtatgacactccagagtctggtcgctacagaagttttacaggtctgaaaaaa 245
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 655 tttcactggtatgacactccagagtctggtcgctacaggagttttacaggtgtgaaaaaa 596
Query: 246 ataatctgttttcaaaaccgttgtgactattttagtttctttgtctttccctataactgt 305
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 595 ataatctggtttcaaaaccgttgtgactattttagtttctgtgtctttccctataactgt 536
Query: 306 gaggcttatctggtctgggtctacataagtaaggctggggcgtttattgtccttgagtag 365
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 535 gaggcttagctggtctgggtctacataagtaaggctggggtgtttattgtccttgagttg 476
Query: 366 aatcaacacatcatctcgtcaagaatgtatttaagtcttctttgagttccttcatccgtg 425
||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 475 aatcaacacatcagcttgtcaagagtgtatttaagtcttcttcgagttccttcatccgtg 416
Query: 426 ttttatggtttt 437
||||||||||||
Sbjct: 415 ttttatggtttt 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_c01.g1 MSMg01no396_c01.g1 CHROMAT_FILE:
MSMg01no396_c01.g1 PHD_FILE: MSMg01no396_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:11 2005
(450 letters)
>mm_chr5_141283260_141284108
Length = 849
Score = 735 bits (380), Expect = 0.0
Identities = 423/450 (94%), Gaps = 21/450 (4%)
Strand = Plus / Plus
Query: 1 agtatggcctgagattagagacagaaagttctttaggagcacagcagccaccagcctccc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 201 agtatggcctgagattagagacagaaagttctttaggagcacagcagacaccagcct-cc 259
Query: 61 ccatggctttgatgacagtggttctgatggccagcattctcaggggtatataacagaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccatggctttgatgacagtggttctgatggccagcattctcaggggtatataacagaggt 319
Query: 121 tggacccgagacatttcccgtagcctttgatcatggggccttctgcacacgtcaggtgca 180
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 tggacccgagacatttcccgtagcctttgatcat--------------------ggtgca 359
Query: 181 gcataaaggtggccagaccctcagaacatccctctacacgtcacataatacacacacaag 240
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 360 gcataaaggtggccagatcctcagaacattcctctacacgtcacataatacacacgcaag 419
Query: 241 cccaagagaccactgtcctaactgcagaggtaaaaggaaactatttctagaaaaaagcta 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cccaagagaccactttcctaactgcagaggtaaaaggaaactatttctagaaaaaagcta 479
Query: 301 atgactggactgaggaatgggcagcaatatgaggcaaaagcggcttctggcggtccagct 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 480 atgactggactgaggaatgggcagcaatatgaggcaaaagtggcttctggcggtccagct 539
Query: 361 tctacagtaatacttatttttgattaggtgtatgtaggtgtgtgtatgcacatgagtgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tctacagtaatacttatttttgattaggtgtatgtaggtgtgtgtatgcacatgagtgca 599
Query: 421 cacgtctgaggagaccctcagagatcttgg 450
||||||||||||||||||||||||||||||
Sbjct: 600 cacgtctgaggagaccctcagagatcttgg 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 849
Length adjustment: 10
Effective length of query: 440
Effective length of database: 839
Effective search space: 369160
Effective search space used: 369160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
