MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-396C08
Chromosome	5 (Build37)
Map Location	29,443,574 - 29,444,128
singlet/doublet	singlet
Overlap gene	none
Upstream gene	En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream gene	Rnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444
Link	Open Mouse BAC browser

Click to get alignment info.

name	En2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13799 MGI:95390
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cnpy1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269637 MGI:2442451
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prr8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381626 MGI:1919670
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 149 ESTs, 2 Proteins

name	Shh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20423 MGI:98297
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039258 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 55 mRNAs, 2374 ESTs, 22 Proteins

name	Rnf32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56874 MGI:1861747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG664949 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664949 MGI:3647909
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs pseudo : _no_value

name	Lmbr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56873 MGI:1861746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG620572 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620572 MGI:3646783
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Gm1040 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433864 MGI:2685886
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hlxb9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15285 MGI:109160
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619355 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619355
definition	note : developmental pluripotency associated 5 pseudogene pseudo : _no_value

name	Ube3c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100763 MGI:2140998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins pseudo : _no_value

name	EG332993 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:332993 MGI:3648499
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Dnajb6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23950 MGI:1344381
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	EG433865 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433865 MGI:3643001
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 177 ESTs, 3 Proteins

name	LOC100039405 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039405
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 1 Protein pseudo : _no_value

name	LOC100034662 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100034662
definition	note : pseudogene LOC100034662 pseudo : _no_value

name	LOC100039369 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039369
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Il6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16193 MGI:96559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tyms (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22171 MGI:98878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG242914 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242914 MGI:3645260
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 8 Proteins

name	Gm444 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242915 MGI:2685290
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 7 Proteins

name	En2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385154 GeneID:13799 MGI:95390
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : engrailed 2 transcript_id : NM_010134.3

name	Cnpy1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369857 GeneID:269637 MGI:2442451
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : canopy 1 homolog (zebrafish) transcript_id : NM_175651.3

name	Prr8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374627 GeneID:381626 MGI:1919670
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 149 ESTs, 2 Proteins product : proline rich 8, transcript variant 1 transcript_id : XM_355585.5

name	Shh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254618 GeneID:20423 MGI:98297
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sonic hedgehog transcript_id : NM_009170.2

name	LOC100039258 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253820 GeneID:100039258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 mRNAs, 1189 ESTs, 22 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), transcript variant 2 transcript_id : XM_001472557.1

name	LOC100039258 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253818 GeneID:100039258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 55 mRNAs, 2372 ESTs, 22 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), transcript variant 1 transcript_id : XM_001472531.1

name	LOC100039258 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253822 GeneID:100039258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 288 ESTs, 2 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), transcript variant 3 transcript_id : XM_001472580.1

name	Rnf32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354274 GeneID:56874 MGI:1861747
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 32 transcript_id : NM_021470.4

name	Lmbr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126507092 GeneID:56873 MGI:1861746
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : limb region 1 transcript_id : NM_020295.3

name	EG620572 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253824 GeneID:620572 MGI:3646783
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG620572 transcript_id : XM_884968.3

name	Gm1040 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134288860 GeneID:433864 MGI:2685886
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1040, (NCBI) transcript_id : NM_001033457.2

name	Hlxb9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9910267 GeneID:15285 MGI:109160
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeobox gene HB9 transcript_id : NM_019944.1

name	Ube3c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802020 GeneID:100763 MGI:2140998
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin protein ligase E3C transcript_id : NM_133907.2

name	Dnajb6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386693 GeneID:23950 MGI:1344381
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily B, member 6 transcript_id : NM_011847.3

name	Dnajb6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361614 GeneID:23950 MGI:1344381
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily B, member 6 transcript_id : NM_001037941.2

name	Dnajb6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803560 GeneID:23950 MGI:1344381
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily B, member 6 transcript_id : NM_001037940.2

name	EG433865 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374638 GeneID:433865 MGI:3643001
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 177 ESTs, 3 Proteins product : predicted gene, EG433865 transcript_id : XM_485586.4

name	LOC100039369 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253827 GeneID:100039369
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039369 transcript_id : XM_001472770.1

name	Il6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13624310 GeneID:16193 MGI:96559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 6 transcript_id : NM_031168.1

name	Tyms (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347432 GeneID:22171 MGI:98878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymidylate synthase transcript_id : NM_021288.3

name	Gm444 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374640 GeneID:242915 MGI:2685290
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 7 Proteins product : gene model 444, (NCBI) transcript_id : XM_144253.6

name	En2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753752 CCDS:CCDS19143.1 GeneID:13799 MGI:95390
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0030902 - hindbrain development [Evidence IGI]; GO:0030901 - midbrain development [Evidence IGI]; GO:0048666 - neuron development [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : engrailed 2 protein_id : NP_034264.1

name	Cnpy1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28316752 CCDS:CCDS19144.1 GeneID:269637 MGI:2442451
definition	codon_start : 1 product : canopy 1 homolog protein_id : NP_783582.1

name	Prr8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374628 GeneID:381626 MGI:1919670
definition	codon_start : 1 product : proline rich 8 isoform 1 protein_id : XP_355585.5

name	Shh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21617861 CCDS:CCDS19146.1 GeneID:20423 MGI:98297
definition	GO_component : GO:0009986 - cell surface [Evidence IDA]; GO:0005615 - extracellular space [Evidence IDA]; GO:0045121 - lipid raft [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0043237 - laminin-1 binding [Evidence IDA]; GO:0005113 - patched binding [Evidence IPI]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008209 - androgen metabolism [Evidence IMP]; GO:0001525 - angiogenesis [Evidence IDA]; GO:0007411 - axon guidance [Evidence IDA] [Evidence IMP]; GO:0048754 - branching morphogenesis of a tube [Evidence IMP]; GO:0007154 - cell communication [Evidence IEA]; GO:0048468 - cell development [Evidence IMP]; GO:0001708 - cell fate specification [Evidence IGI] [Evidence IMP]; GO:0007267 - cell-cell signaling [Evidence IMP]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0009953 - dorsal/ventral pattern formation [Evidence IGI]; GO:0009790 - embryonic development [Evidence IGI]; GO:0042733 - embryonic digit morphogenesis [Evidence IGI]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0048598 - embryonic morphogenesis [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IDA] [Evidence IMP]; GO:0030900 - forebrain development [Evidence IGI]; GO:0007507 - heart development [Evidence IMP]; GO:0030902 - hindbrain development [Evidence IMP] [Evidence IGI]; GO:0016539 - intein-mediated protein splicing [Evidence IEA]; GO:0030324 - lung development [Evidence IMP] [Evidence IGI]; GO:0030539 - male genitalia development [Evidence IMP]; GO:0001656 - metanephros development [Evidence IMP]; GO:0030901 - midbrain development [Evidence IGI]; GO:0045596 - negative regulation of cell differentiation [Evidence IMP] [Evidence IDA]; GO:0030336 - negative regulation of cell migration [Evidence IDA]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0007405 - neuroblast proliferation [Evidence IDA]; GO:0048663 - neuron fate commitment [Evidence IMP]; GO:0014003 - oligodendrocyte development [Evidence IDA]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP] [Evidence IGI]; GO:0030850 - prostate gland development [Evidence IMP]; GO:0006508 - proteolysis [Evidence IEA]; GO:0042127 - regulation of cell proliferation [Evidence IDA]; GO:0030162 - regulation of proteolysis [Evidence IDA]; GO:0007435 - salivary gland morphogenesis [Evidence IMP]; GO:0007165 - signal transduction [Evidence TAS]; GO:0007224 - smoothened signaling pathway [Evidence IGI] [Evidence IDA]; GO:0051146 - striated muscle cell differentiation [Evidence IMP] [Evidence IDA]; GO:0001658 - ureteric bud branching [Evidence IMP]; GO:0001570 - vasculogenesis [Evidence IDA] codon_start : 1 note : short digits product : sonic hedgehog protein_id : NP_033196.1

name	LOC100039258 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253819 GeneID:100039258
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform 1 protein_id : XP_001472581.1

name	LOC100039258 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253821 GeneID:100039258
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform 2 protein_id : XP_001472607.1

name	LOC100039258 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253823 GeneID:100039258
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) isoform 3 protein_id : XP_001472630.1

name	Rnf32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981166 GeneID:56874 MGI:1861747
definition	GO_component : GO:0016235 - aggresome [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : limb region 2 product : ring finger protein 32 protein_id : NP_067445.2

name	Lmbr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45598379 CCDS:CCDS19148.1 GeneID:56873 MGI:1861746
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0042733 - embryonic digit morphogenesis [Evidence IMP]; GO:0035115 - embryonic forelimb morphogenesis [Evidence ISS]; GO:0035116 - embryonic hindlimb morphogenesis [Evidence ISS] codon_start : 1 product : limb region 1 protein_id : NP_064691.2

name	EG620572 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253825 GeneID:620572 MGI:3646783
definition	codon_start : 1 product : hypothetical protein protein_id : XP_890061.3

name	Gm1040 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134288861 CCDS:CCDS19149.1 GeneID:433864 MGI:2685886
definition	GO_function : GO:0003723 - RNA binding [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA] codon_start : 1 product : nucleolar protein with MIF4G domain 1-like protein_id : NP_001028629.2

name	Hlxb9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910268 CCDS:CCDS19150.1 GeneID:15285 MGI:109160
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : homeobox gene HB9 protein_id : NP_064328.1

name	Ube3c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789341 GeneID:100763 MGI:2140998
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA] codon_start : 1 product : ubiquitin protein ligase E3C protein_id : NP_598668.1

name	Dnajb6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83816907 CCDS:CCDS19151.1 GeneID:23950 MGI:1344381
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; mammalian relative of DnaJ product : DnaJ (Hsp40) homolog, subfamily B, member 6 isoform a protein_id : NP_001033029.1

name	Dnajb6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83816903 GeneID:23950 MGI:1344381
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3; mammalian relative of DnaJ product : DnaJ (Hsp40) homolog, subfamily B, member 6 isoform c protein_id : NP_035977.2

name	Dnajb6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83816913 CCDS:CCDS19152.1 GeneID:23950 MGI:1344381
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2; mammalian relative of DnaJ product : DnaJ (Hsp40) homolog, subfamily B, member 6 isoform b protein_id : NP_001033030.1

name	EG433865 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897237 GeneID:433865 MGI:3643001
definition	codon_start : 1 product : similar to spermidine/spermine N1-acetyltransferase protein_id : XP_485586.2

name	LOC100039369 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253828 GeneID:100039369
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472820.1

name	Il6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13624311 CCDS:CCDS19153.1 GeneID:16193 MGI:96559
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005138 - interleukin-6 receptor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006953 - acute-phase response [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045079 - negative regulation of chemokine biosynthesis [Evidence IMP] [Evidence IDA]; GO:0001781 - neutrophil apoptosis [Evidence IDA] [Evidence IMP] codon_start : 1 product : interleukin 6 protein_id : NP_112445.1

name	Tyms (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46358062 CCDS:CCDS19154.1 GeneID:22171 MGI:98878
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0004799 - thymidylate synthase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006231 - dTMP biosynthesis [Evidence IEA]; GO:0009165 - nucleotide biosynthesis [Evidence IEA] codon_start : 1 product : thymidylate synthase protein_id : NP_067263.1

name	Gm444 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897249 GeneID:242915 MGI:2685290
definition	codon_start : 1 product : similar to Gm444 protein protein_id : XP_144253.5

name	LOC100039363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039363
definition	number : 1 pseudo : _no_value

name	EG664949 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94374634 GeneID:664949 MGI:3647909
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs product : predicted gene, EG664949 pseudo : _no_value transcript_id : XR_001686.1

name	EG332993 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149253826 GeneID:332993 MGI:3648499
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : predicted gene, EG332993 transcript_id : XR_035198.1

name	LOC100039405 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253829 GeneID:100039405
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 51 ESTs, 1 Protein product : similar to protein phosphatase 1, regulatory subunit 10 pseudo : _no_value transcript_id : XR_030956.1

name	EG242914 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149253830 GeneID:242914 MGI:3645260
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 8 Proteins product : predicted gene, EG242914 transcript_id : XR_001540.2

clone name	MSMg01-373L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233I13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-270D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079B19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-418D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089D08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-322C09
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-025E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233C02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-396C08.T7 (MSMg01no396_c08.b1)	MSMg01-396C08.TJ (MSMg01no396_c08.g1)
ACC	AG496794	AG496795
length	748	754
length of high quality (start - end)	559 (32 - 590)	430 (66 - 495)
definition	CHROMAT_FILE: MSMg01no396_c08.b1 PHD_FILE: MSMg01no396_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:12 2005	CHROMAT_FILE: MSMg01no396_c08.g1 PHD_FILE: MSMg01no396_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:12 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCCCTCA TTATCCGGAAGCCAGTCTAGTCCATCCAGAGCATGCCTCCTGCTGCATGC CTGGACTCTACTCTTGCTCTTACTGGGCTTGCTTCTGACAAGACAGCATC ACCTAGTGGAGGAGTGCCAGGAGAACTTGGGATACCTGCATCACCGAATT CCTGGGGTCTTGGCTCTCAGCTAAAAATGGAGGCTACAAGTCATCACTCT TCAGTTCTTAATCATTATAAGGTTCACTAGGAAAGACTTCCCACTTCTCC AAATACAATATTGTTAGAATAAGTCAAATTGCTATGTTAGAAGTTTTCCT CTTGCTACTCAAGATCACTGTGCTCAGATGGGTCAGAGATTGGGGGGGGG GCAGACACTCTGGGCTTCTGTGCACTCCCCTTCACTCTGCCTCAGGAAAG AGGCTATTGGAAACCCTCTATGTGTCTAATGTTTGGATGCTGAGGACCAC TTCTTAGATCTGGGGTAATCTTCCTTTACGGAGGACACCATTTCTCCCTA GGCAACTTTTCCTTAGAAAAATTTTCTGGACTTATACACCATATAATAAC TTGAGAAAAAGTAAAAAGTGAAAGGACATTTGCAGTGAGCAGGGGCTTCC CGAAATATGGGCGGGTTTGCGACAGGCACATTACTAACTGTTACTCCTGT GGCTATGACTTCAGCTCCGGTCATGGTTGGATCCCCCTTCCCCCCCGN	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTAACATGAAGGGATGC TGAATTTTGTCAAATGCTTTTTCAGCATCTAATGAAATGAGCATGTTTGT TGTTTTTTTTTTTCCCATTGAGTTTGTTTATGTAGTGGATTACATTGATG GATTTCCTTATATTGAAGTATACCTGCATCCCTGGAATAAGGCCTACCTG ATCATGGTGAATGATCGTTTTGATGAGTTCTTGGATTTGGTTTGCAAGAA TTGTATTGAGAACTTTTCATTTCTATTCATAAGGGAAATTGGTCTACAAT TCTTTTTGTTGGGTCTTTGTGAGGTTTTGGTATCAGCATAACTGTGGTTT CATAGAACAAATTGGGTAGTATTCCTTCTGTTTCTATTTTGTGGAATAGT TTGAAGAGTATTAGGTCTTCTTTGAAGGTCTGATAGAATTCTTCACTTTG ATTGGTAGAATTCTAACGATTGCTTCTTTCTTTATGCCGTATGTTACTGT TTAGATGTCTTATCTGACCTCGATTTTCTTTTACTATTTGTCATCTGTCT ACAAAACTGTTTACTTCATCCCCTTTTATCCCGTTTTCGCCTTCATTTTC CTTTTTGTTCCAACTTTTTGCCCGCTTTTCTCCACATCTTCTTTTCCATT CTCGACTCTACTCCTCCACTCTTACTTCTCCACTTTCTTTTCTCTTTTAT CCTG
quality values	Open. Hide. 15 21 12 12 17 11 9 9 12 13 27 27 59 26 19 17 14 14 19 27 9 9 9 13 12 11 11 11 16 13 14 19 24 29 30 59 59 59 36 36 36 36 44 33 50 50 37 37 37 37 24 22 17 16 16 12 12 12 28 28 37 37 37 37 37 41 48 59 57 57 38 38 38 42 42 42 40 40 40 40 50 50 53 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 54 54 50 50 48 48 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 44 44 42 48 48 48 48 54 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 68 68 68 59 53 57 53 53 53 50 59 59 59 59 59 59 59 59 57 57 50 50 50 50 59 59 39 24 23 13 10 10 9 8 8 8 8 8 10 28 34 41 47 47 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 59 59 59 59 59 59 57 57 57 54 54 57 59 68 68 57 57 57 57 57 57 57 57 57 59 59 59 59 59 54 54 59 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 57 57 57 48 48 48 59 59 59 59 54 59 59 59 59 59 59 59 59 57 57 59 57 59 59 68 68 68 68 68 68 68 57 57 59 59 59 59 57 68 57 57 57 57 59 50 54 54 57 57 57 57 54 57 46 57 57 43 37 44 57 57 57 57 57 54 59 59 59 57 57 59 57 57 57 44 44 37 35 35 44 44 47 47 47 50 48 50 54 57 54 47 47 46 46 41 41 43 59 59 59 46 43 36 36 36 43 43 57 37 30 19 17 17 22 30 34 43 43 48 57 48 36 36 29 29 28 28 35 35 37 30 30 18 17 14 14 22 34 35 36 40 40 39 44 37 33 28 28 34 30 25 28 30 34 37 37 41 44 44 30 30 17 9 8 8 8 9 9 16 25 26 31 32 32 28 31 41 37 37 37 32 20 23 10 10 9 9 10 14 14 17 15 15 12 14 12 13 18 22 21 18 24 26 30 18 14 14 18 12 14 9 10 9 9 12 14 28 14 15 18 14 12 13 11 10 10 10 10 14 11 12 12 15 15 17 13 13 10 12 10 6 8 6 6 8 8 9 9 9 9 8 6 8 6 6 6 6 8 8 8 9 8 8 8 10 9 7 6 8 6 7 7 6 8 8 8 9 15 12 12 12 8 8 8 8 8 8 10 11 8 10 8 8 8 8 8 8 9 8 9 10 10 10 10 8 9 10 10 8 15 13 9 10 13 9 9 11 9 13 10 10 9 10 11 11 9 10 9 8 8 10 17 12 12 10 10 10 12 21 18 21 12 10 3 0	Open. Hide. 11 17 8 8 8 11 24 31 37 43 41 41 41 39 37 39 44 44 37 35 27 17 9 9 12 14 9 10 9 13 13 25 19 34 34 37 43 48 47 47 47 48 47 47 50 50 50 50 41 33 18 10 13 10 10 10 10 11 12 9 16 22 28 31 28 50 44 53 53 53 57 57 59 36 42 36 36 36 42 57 53 53 53 53 57 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 47 47 47 50 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 51 51 51 68 68 68 68 68 59 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 52 57 57 68 57 57 57 50 50 50 50 50 57 57 57 57 68 68 68 59 68 68 68 68 68 68 57 59 59 57 68 68 68 57 68 57 57 57 57 57 68 59 59 59 59 57 57 57 68 68 68 57 57 43 43 43 44 43 48 48 57 57 57 57 57 57 57 57 59 54 54 57 57 57 57 57 57 57 54 54 59 59 68 57 57 57 57 48 59 48 48 48 59 59 57 57 57 57 57 57 59 59 59 48 59 57 59 59 57 47 47 53 47 53 41 59 59 59 41 30 23 11 11 11 11 11 27 27 28 23 23 28 34 37 50 50 50 57 57 59 59 59 59 59 59 48 48 47 47 48 50 48 48 57 57 57 57 57 57 57 68 68 68 68 59 59 59 59 59 59 59 43 39 35 35 35 47 59 59 59 57 57 57 59 57 48 48 48 57 57 48 57 57 42 44 42 35 35 35 42 47 46 57 57 57 48 48 48 48 48 57 57 48 44 44 43 43 42 40 36 39 37 37 42 41 32 24 14 14 14 21 27 44 47 48 54 57 57 57 44 42 32 32 42 42 46 54 54 59 59 57 43 37 37 32 24 24 16 16 16 29 32 43 47 47 37 28 20 20 20 28 28 37 37 33 28 28 37 37 41 47 59 59 47 37 33 24 20 12 12 15 20 19 15 11 11 11 13 15 29 29 37 37 32 27 18 14 14 14 15 18 17 17 14 19 12 12 10 9 12 12 28 28 13 13 11 14 14 12 12 19 21 30 37 37 40 33 37 22 16 16 11 14 14 32 17 16 11 8 8 8 8 8 8 8 8 8 8 8 8 12 14 17 17 12 10 10 13 10 10 9 9 10 16 13 24 8 8 6 6 8 8 8 8 8 9 9 10 10 9 9 10 8 8 6 6 8 8 10 8 8 8 9 9 9 10 13 10 10 9 10 8 8 8 8 8 9 10 13 13 12 11 8 11 8 8 10 15 10 10 10 9 8 8 8 8 8 8 8 8 8 13 13 8 13 13 16 19 17 10 8 8 8 8 8 8 8 10 10 11 15 15 24 26 32 23 23 8 8 8 8 8 8 8 8 8 9 12 11 26 12 11 8 8 8 8 8 13 22 17 13 10 10 10 10 10 15 15 11 11 9 10 10 9 10 8 8 9 8 12 10 12 8 8 6 6 6 8 8 8 8 8 7 7 8 8 19 12 10 6 6 8 10 10 11 10 10 8 10 7 6 8 8 8 8 8 8 9 19 13 9 9 9 9 10 9 9 9 10 12 12 12 10 11 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no396_c08.b1 MSMg01no396_c08.b1 CHROMAT_FILE:
MSMg01no396_c08.b1 PHD_FILE: MSMg01no396_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:12 2005
         (559 letters)



>mm_chr5_29443370_29444329
          Length = 960

 Score = 1004 bits (519), Expect = 0.0
 Identities = 546/555 (98%), Gaps = 1/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcggaattcccctcattatccggaagccagtctagtccatccagagcatgcctcctgctg 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gcggaattcccctcattatcaggaagccagtctagtccatccagagcatgcctcctgctg 264

                                                                       
Query: 65  catgcctggactctactcttgctcttactgggcttgcttctgacaagacagcatcaccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgcctggactctactcttgctcttactgggcttgcttctgacaagacagcatcaccta 324

                                                                       
Query: 125 gtggaggagtgccaggagaacttgggatacctgcatcaccgaattcctggggtcttggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtggaggagtgccaggagaacttgggatacctgcatcaccgaattcctggggtcttggct 384

                                                                       
Query: 185 ctcagctaaaaatggaggctacaagtcatcactcttcagttcttaatcattataaggttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcagctaaaaatggaggctacaagtcatcactcttcagttcttaatcattataaggttc 444

                                                                       
Query: 245 actaggaaagacttcccacttctccaaatacaatattgttagaataagtcaaattgctat 304
           |||||||||||||||||||||||| ||||||||||  |  ||||||||||||||||||||
Sbjct: 445 actaggaaagacttcccacttctcaaaatacaataaaggcagaataagtcaaattgctat 504

                                                                       
Query: 305 gttagaagttttcctcttgctactcaagatcactgtgctcagatgggtcagagattgggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttagaagttttcctcttgctactcaagatcactgtgctcagatgggtcagagattgggg 564

                                                                       
Query: 365 gggggg-cagacactctgggcttctgtgcactccccttcactctgcctcaggaaagaggc 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggggggcagacactctgggcttctgtgcactccccttcactctgcctcaggaaagaggc 624

                                                                       
Query: 424 tattggaaaccctctatgtgtctaatgtttggatgctgaggaccacttcttagatctggg 483
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 tattggaaaccctctatgtgtctaatgtttggatgatgaggaccacttcttagatctggg 684

                                                                       
Query: 484 gtaatcttcctttacggaggacaccatttctccctaggcaacttttccttagaaaaattt 543
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 gtaatcttcctttacggaggacaccatttctccctagtcaacttttccttagaaaaattt 744

                          
Query: 544 tctggacttatacac 558
           |||||||||||||||
Sbjct: 745 tctggacttatacac 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space:   521550
Effective search space used:   521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information