BAC Information

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BAC

Clone NameMSMg01-396F15
Chromosome5 (Build37)
Map Location 137,953,470 - 137,953,780
singlet/doubletsinglet
Overlap geneEG666372
Upstream geneCutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7
Downstream genePerq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F15.T7 (MSMg01no396_f15.b1)MSMg01-396F15.TJ (MSMg01no396_f15.g1)
ACCAG496950AG496951
length800842
length of high quality
(start - end)		315 (38 - 352)222 (68 - 289)
definitionCHROMAT_FILE: MSMg01no396_f15.b1 PHD_FILE: MSMg01no396_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:27 2005CHROMAT_FILE: MSMg01no396_f15.g1 PHD_FILE: MSMg01no396_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
GGTTCTCCTGTGTCTTCAGCTGCTTATTTATTGAGGCAGGATCTCTTCGC
TGAGGCAGAATACGCTGTTTTGGGTCCTCTTGCAAGAGGGCTTCCCTTTC
TTCCGGGGATGCTAGGATGGCTGTGTGCTCAGCTAGCATTTAAGTGGCTC
TAGAGATCCAAATTCTGGCCGTCACCCTTGCTCAAGCGCTACAGCCACCA
GAGTCCTTTCTTCAGACTTTCGGGTCACCCTCTCTCACCTAAAGCTGAGC
TGTTTCTTCTTTTCTCTCTCTCTAACTGTATGATGCTGGGGGGGGGGGGG
CACATGCAGGGCCAGTGGACAACTCTGCGGCGTTTGTTCTCTACTCCCAC
CCAGACACGCCCCCTTGGTCAACAGGTTTGCCACAAAGTACCTTGACCGG
CTAAGCCATCTCACCTTTGGCTCTTGATCCCGATCTCATATGCCCACACT
TGACGCCCCCGGTTAGTTGGAAAGTTAAAACCCCCCTTATCCCCATTTCT
TATTACCCGCTTTTTTTTTTTTCCGCCACTTTATACATTTTTTTCCACCT
TTCATTTCACTCCCCCTTTTTATTGACCTCCGATATCTTTCCGCGTGTTT
ACACTTGCTCCCTCTCCTTTTCCTTTCCTCGTCTCCTCTCCCCCCGTTCT
GTAGTCTAATTTTATTATTTTTTCCTTTTATCCCTTCTCCTTATCTTTTT
TTATTATATTTTTTCACTATTTCTTTGCTCTCTTATCCGCCTTTATCCTT


TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGCTAAGCCCTCTCAGAGCTCAGGGAGCTCCA
GGTCAGCAAACTGAGGCCACCTTAAAAAATAACTTGGAGGCGGGTACTGG
TGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTT
CTGAGTTTGAACTCTACAAAATGAGTTCCAGGACAGCCAGGACTACACAG
AGAAACCCTGTCTCCGGGGGGGGGGGGGGAACCTTGGGGTAGGGGTATAN
NTTTGAGTTTTTTTTTTTTTTGGGGGNGGGTGGGTGGNNGTGGAGCAATT
TATCTTTTTTTCTATTTCCTTCTTATGCTTTTTTATGTTTTCGTTTCTTT
TTTGCCTTGTTCCCCCCCCCCCCCTTCTATTTCTTCTTCTTCCCCTACTT
ATCCTTTATCCATCTCTCTCTCTTCCATCTTCTCTTTCCCCCTTTTTTTC
CCTCCTTTTTCCCTTTCCGCTTTTATCCTATCTTTTTGCCCCTTTTTTCT
CTTTTTCCTTTTTTCCCTTCCTTTTTCCCCGCTTATCTCCTCTCCTATTT
CTTTTCTCTTTTCCCCCCATTTTTCCTTTTTTTCCTTATCCTTTCCCTTT
GCCCCTCTCCCTATTTCCTTTTTTCCCTCCCTTTATTATCACCCCTCTTT
TTCCCTTTTTCCTTTCTTTTTTTATTTCTCTCCCATTTTCTCTCTTCCCT
TCCTGTTTTTCCCCCTTTTGTTCCTCTCTATTAACATCTTCTCCTTCCTG
CTTTTTTTCCCAGTCTTATCTTTTCTTTTTCTATTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f15.b1 MSMg01no396_f15.b1 CHROMAT_FILE:
MSMg01no396_f15.b1 PHD_FILE: MSMg01no396_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:27 2005
         (315 letters)



>mm_chr5_137953266_137953980
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaggttctcctgtgtcttcagctgcttatttattgaggcaggatctcttcgct 64
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515 gaattctcaggttctgctgtgtcttcagcagcttatttattgaggcaggatctcttcgct 456

                                                                       
Query: 65  gaggcagaatacgctgttttgggtcctcttgcaagagggcttccctttcttccggggatg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 455 gaggcagaatacgctgttttgggtcctcttgcaagagggcttccctttctgccggggatg 396

                                                                       
Query: 125 ctaggatggctgtgtgctcagctagcatttaagtggctctagagatccaaattctggccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctaggatggctgtgtgctcagctagcatttaagtggctctagagatccaaattctggccg 336

                                                                       
Query: 185 tcacccttgctcaagcgctacagccaccagagtcctttcttcagactttcgggtcaccct 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 335 tcacccttgctcaagcgctacagccaccagagtcctttcttcagactttcaggtcaccct 276

                                                                       
Query: 245 ctctcacctaaagctgagctgtttcttcttttctctctctctaactgtatgatgctgggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctctcacctaaagctgagctgtttcttcttttctctctctctaactgtatgatgctgggg 216

                      
Query: 305 gggggggggca 315
           |||||||||||
Sbjct: 215 gggggggggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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