XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTC
TGAAGAACAGACTTGGAGGAGGAAGCAGCTCATTATGAGAGAAAAGGGTA
CCAGCCAGATAAAATGCTAGCTAATCAGTTAAGGAAAAAGCCAAAAGCGG
CTGGCGAAGGCCAGCATGCTGCTCAGCCTCCGGGCAGTCGGCTTCAAGGT
CATAGTGCACTTCTGCCCCATGCGGAGNTCCNNCCGCCCTGGCGTANNGT
GTGTTAAGCCCCTGGGTGGCANAAAAAGGCCCAAATGGGGCGNTAAAATC
CCTTCTTTTCCCAAAGGGAGGGAAACCCCCGGGGGAGAAAAAAAACAAAG
GGGGTTTTCTCGGCCCTTTTTAAAAAAAACCCACAAAGGGNTGTGGGGTT
GGTGCCCCCCCCCTTTTCTTTTTAAAAAAAAAAATTTTNNANAANNAAAT
AGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGGCCCAAAATAGCTTN
NATCANNNNNNNNNNNNNNTNNNNNNNNNGTAATCATATTNTTTTGTATG
NGNGNNNNNNNNNNNNNAAACGAGTGTGGTGGGGGGNTTTTTGAANNNNN
NNNTCTTTNNNNNNTTGTGTGGAAGACTCCCANAGANNNAAAGGNNAGGG
AGGTGGAGTNNGGNNNAAAATAAAAAATAAATATATAANGNGNNNNNNCG
GGAGAGAATATTTTTTTTTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCTTACAGTGTAGTTCAGTTTTATATAGGTAT
GCAGAATTTTAAAGCAAAATGAAAATATTCCCTGTGTATCTTTGACTCTT
GTTATCCAAAACCTTATTTGGAAAAAAAAATATTTATTTTTTCTAGTTGT
GCCAGAATCTAGAATTGTGAGTTACCATGGCAATAAAAATTTGAAAAAAG
TTTTATCCTAAATAAAATTCACCTTAAACTGCCATAACATTTAATAGGTA
TTAACATATTACACAGAATATTTCATATTTAATTTTAGGAAAGGCTGCAC
TGTTCATTTAAAGAAATGTTTAGGACACTGATTCTAAGAAATCTCAACCC
ACTTAGAAAGAAGTACAGAGTGCATGTGTAATTTTAAGATGGTCTTAATG
CAGGGCAGTGCAAACATAAACTCAGATTTGCTGGAGCTGTGCGCACAAGT
CCTGAATGTGAACAAATTTAATCCCTCCCAAATCAGAGTAACGATAGGAG
AGGGGCTTGCGGCCGTCCACCCATAGCTGGGTAAAATATTAACACCCTTA
GCTTCCTAGAAAAACGCCGTTTTCTCTGAGCTGGGCGAACTTTTGCGGCA
TATTTTCGCCTATATCCCTAACTATTGCGGGCATCTCATACTGTTCGGCN
CTTTATCACGCTCTCCGTTATCTTTTTTCCCTG

Query= MSMg01no396_g04.g1 MSMg01no396_g04.g1 CHROMAT_FILE:
MSMg01no396_g04.g1 PHD_FILE: MSMg01no396_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:30 2005
         (424 letters)



>mm_chr5_47523271_47524094
          Length = 824

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttacagtgtagttcagttttatataggtatgcagaattttaaagcaaaatgaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttacagtgtagttcagttttatataggtatgcagaattttaaagcaaaatgaaaata 260

                                                                       
Query: 61  ttccctgtgtatctttgactcttgttatccaaaaccttatttggaaaaaaaaatatttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccctgtgtatctttgactcttgttatccaaaaccttatttggaaaaaaaaatatttat 320

                                                                       
Query: 121 tttttctagttgtgccagaatctagaattgtgagttaccatggcaataaaaatttgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttctagttgtgccagaatctagaattgtgagttaccatggcaataaaaatttgaaaa 380

                                                                       
Query: 181 aagttttatcctaaataaaattcaccttaaactgccataacatttaataggtattaacat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aagttttatcctaaataaaattcaccttaaactaccataacatttaataggtattaacat 440

                                                                       
Query: 241 attacacagaatatttcatatttaattttaggaaaggctgcactgttcatttaaagaaat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attacacagaaaatttcatatttaattttaggaaaggctgcactgttcatttaaagaaat 500

                                                                       
Query: 301 gtttaggacactgattctaagaaatctcaacccacttagaaagaagtacagagtgcatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttaggacactgattctaagaaatctcaacccacttagaaagaagtacagagtgcatgt 560

                                                                       
Query: 361 gtaattttaagatggtcttaatgcagggcagtgcaaacataaactcagatttgctggagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaattttaagatggtcttaatgcagggcagtgcaaacataaactcagatttgctggagc 620

               
Query: 421 tgtg 424
           ||||
Sbjct: 621 tgtg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)