BAC Information

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BAC

Clone NameMSMg01-396J16
Chromosome5 (Build37)
Map Location 56,747,177 - 56,747,290
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396J16.T7 (MSMg01no396_j16.b1)MSMg01-396J16.TJ (MSMg01no396_j16.g1)
ACCAG497142AG497143
length847787
length of high quality
(start - end)
114 (66 - 179)418 (66 - 483)
definitionCHROMAT_FILE: MSMg01no396_j16.b1 PHD_FILE: MSMg01no396_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:46 2005CHROMAT_FILE: MSMg01no396_j16.g1 PHD_FILE: MSMg01no396_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGACAATCCGCGGAATTCAATATA
TATTTCGCCAACAGAAAAAGAAAAGTGGATACTTTTAGAAAAACCAACAA
ACCAACAAACATGTTTTGCTTTCTGTGAACTCACATGTAGGTGTTTAGTA
AATGAGATTGAGTTTAGGGGATGAGGAAGCCACCCCTTCCCCCNCCTTCT
CCCCCCCTCTTTTCTATTTCCCTTCCCCCCCCCCTGTTTTTTCCTTCCCT
TCCCTTCCCTCCCCCTTTCCCCTCTCTCTCCCTTCTTCCTCCCCCTCTTC
TCCCCCCCTTTTTTTTTTCCTCCCTTTCCCCCCTTTCCCCTTCCCCCCCT
TCCCCCCCCCCCCTTTTCTCCCCACTTCCCCCTTTTTCCTCTTTTCCTCT
TTCCCCCCCCCCCCCCCCCCCCCCCANTCCACTTTTTTATTCCCCCTCTT
TCCCCCCTTTTTCCTCCCCCTTCTCTTCCCTCCCTCCACCCCTTTCTTAT
CCCCCCCTTTTCCCCCTTCTTCCCCCCTTTTCCTTCTCCCTCTTCCTTTT
CCCCCTTTCCCTCCTTCCCCCCCTCCCCTTCCCCCCTCCTTTTCGCCTTT
CCTTCTTCCCCACTCTTTTCCCTCCCTCCTCCCCCTCCCCTCTCTCCCCC
CTCCCCCCTTCCCCCCCTCCCTCCTTTCCCCTTCCCCTCCCCCCCCTTTC
TCTCCCCTTTTTTCTCCTCTTTCCTCTTTCCCTTTCTTCTTCCCCTTTCT
CTCCCCTTCCCCCTCTCCTCCACCATTTCTCCTTCCTCTCCCCTCTTCTT
CTACTTCCCCTTTTTCCTCCCACCCCCTTTTCTCCTCCCTCTTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATAAGAATGTTACATATTCAGTGATATTCAGAAT
TGCCTCTAGTATTGTAAGAAAGATAGTGAAAGAAACCAGGCATTACTATC
TACTACATAGAGTTAGAAATCTCAGGACAAGCTTAGCAAAGTAAGTTTAG
AATTCTTATTGTAGTTATATATACTCTGTATGGCAGACTACATTAGTTAT
TAGTAGAAACTCCCCACACACAATCACTTAGAATAAAAGTCAAGTCACTC
CCATATACAGGAATTTACTATGGTTTAGTAAGCAGGCTATGGTTTAAGGA
GAAACTAGAGTACTGCATTATTCATGAGAAGGTTAGCTAGAGCAGAACTC
CCTAATTAGAACCATGGTTTAGGCTTAAAAAAAAGCCCTTGCCCTGGGAG
TGTAAAGACCTTGCATCTGGCTTCTTAGAATACAGCTGACCTTAGATAGA
GCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCCAGTCTTTAT
GTTTGCATTCCTTTGGTTTTGTGAAAGAGTCTCTTAAGCTTCTGTAGCCT
CACTTGTACCTTGGCTGGAGGGGCCCCCAAATTTCCCCATTTTTCCTTCG
GAATAAAAAACCCGAGGCGCCCCTTTGAGAAATTAAATTTCTAAAACAAC
CCTCCTTTTTGTGTCACCCCCGGTTTGGGGCTTGTTATCCGGGCCTCTCC
CCCCCCGGTGATGGGAACCCGGATTTTGTTTTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_j16.b1 MSMg01no396_j16.b1 CHROMAT_FILE:
MSMg01no396_j16.b1 PHD_FILE: MSMg01no396_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:46 2005
         (114 letters)



>mm_chr5_56746977_56747490
          Length = 514

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagaaaagtggatacttttagaaaaaccaacaaaccaacaaacatgttttgctttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagaaaagtggatacttttagaaaaaccaacaaaccaacaaacatgttttgctttctg 260

                                                                 
Query: 61  tgaactcacatgtaggtgtttagtaaatgagattgagtttaggggatgaggaag 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaactcacatgtaggtgtttagtaaatgagattgagtttaggggatgaggaag 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)