BAC Information

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BAC

Clone NameMSMg01-397B12
Chromosome5 (Build37)
Map Location 132,041,243 - 132,041,630
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneCaln1, Wbscr17
Downstream gene4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397B12.T7 (MSMg01no397_b12.b1)MSMg01-397B12.TJ (MSMg01no397_b12.g1)
ACCAG497514AG497515
length775746
length of high quality
(start - end)
396 (73 - 468)124 (126 - 249)
definitionCHROMAT_FILE: MSMg01no397_b12.b1 PHD_FILE: MSMg01no397_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:24 2005CHROMAT_FILE: MSMg01no397_b12.g1 PHD_FILE: MSMg01no397_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTAATTTGTGGCCGCTAAACGACTCCTACATTCAGACACATCCGCGGA
ATCNGNGGATTTCTAGAACAATTATTTTTTGCTTGCTTTCTTACTTGCTT
GCTTGCTTGCTTGCTTGCTTGTTTTGAGAGTAATTGAAGGTCCCAAGAAA
TAGCTTCCATACCAAATGAAATAAATGAATAAAAGCTTAAAATTAACAGC
TAGTCCCCTTGCTGATGATGAAGGAATCTCAATGTTGATAATTCTTGGAT
GGTAAATAACTCTGCTCTACGCTGCAGCTCTGAAATCCAACTCTCTCCAT
CTCGATAGTAGCTTTTCCTTCNAATCTTCTATGTCCATCCAACCTGAAGA
AAGGAGTCTGAAAATGGACCCGCATCATCTCTGCCATGGTCACAGCCAAG
ACCTAGTCATGCACCCCTACTGATCTGCAAAGGCCGGGAAATGGAATCCT
TTACAGGGCAATTTAAGAATGATGAGTTTGGCAGATCTTGAATGTATAGG
AACTGCACATCGGCGTCAATTTAGTGGCCTCTTAAGGACATGATTGGGCC
CTAAATTTCACCGAATCCAAATACACCCCTTCTAAATAGGATTCCTGCCT
CCCTTCCTCGAAATCTTTATAACCCCACCACCTTCAACCTGGTCCTTTTC
CTTCTTTCCTTCTACCTCCTCTCTTCATACCTCAATCTTATTATCCGCCC
TTTTTTCCCTCTTTCCCATACTACCCTACGCCCCATATTACACCCTCTCA
CTCTCTTCATTACGCCTCCTCATAA
ATTGCAGTGGGTAGGCCAGGAGGNCGCCCGGNATACGAATCCTGGGNGAA
NNANAGAAGGTTTCAACAACACCTAGAANANGAAAAGNACNAAATTTNAA
CCACCAAGAAACGGATTTTACCACTAGGCACTCCCTAGTAAAGGATTAAG
TCAGACTTTTATTACTTCTCCACAAAGAAACCCCAAAGACCAGATGGCTT
CACTGGAGAATTCAACTCAACATCTAAAGAATTAGGGCCAATTCTTCTCT
TATCTCTTCCAAAAAGAAAAATCAATGAGCAAGGAACACTAGGAACTCTT
CCAAACTTATTTGATGATTTCAGTANTTTTCTGANACCAAAGCCAAAAAG
ACTGTAAGGAAACTGAACACCACCATCCCTGATGAATACTGATGAAGAAA
TCACACACACACACACACCCCCACACACTCACACACACACACACACTTAC
TCAGCAAACTGGATGCCCAGCGCATTAATAGGCCAATACAATATGACTAT
GTGTGATATATTCCTGCCCCGCCAAGACCATCTCGTCTACAATAAACAGG
AACCGTGACATATATGCTGCACAAAGCTCGCCTGTTTACCCCACCCGGCT
GATCACCCATATTCTGGTCCCGCTCCCCCCCCCTTTCATTGTTCGTTTCG
GCTTTCTTTTTTTTTTCCTCCACTCTTTTTTTCCCTACTCCCCCCCTCGC
CCTATTTAACCCCCTCCTTCTTTTACCTTACTTCTTTCCCCCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_b12.b1 MSMg01no397_b12.b1 CHROMAT_FILE:
MSMg01no397_b12.b1 PHD_FILE: MSMg01no397_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:24 2005
         (396 letters)



>mm_chr5_132040991_132041790
          Length = 800

 Score =  590 bits (305), Expect = e-173
 Identities = 369/400 (92%), Gaps = 16/400 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattttttgcttgctttcttacttgcttgcttgcttgcttgcttgcttgttttgagagta 60
           |||||||||||||||||||||            |||||||||||||||||||||||||||
Sbjct: 640 tattttttgcttgctttctta------------cttgcttgcttgcttgttttgagagta 593

                                                                       
Query: 61  attgaaggtcccaagaaatagcttccataccaaatgaaa----taaatgaataaaagctt 116
           |||||||| ||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 592 attgaaggccccaagaaatagcttccataccaaatgaaacaccaaaatgaataaaagctt 533

                                                                       
Query: 117 aaaattaacagctagtccccttgctgatgatgaaggaatctcaatgttgataattcttgg 176
           |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaaattaatagctaacccccttgctgatgatgaaggaatctcaatgttgataattcttgg 473

                                                                       
Query: 177 atggtaaataactctgctctacgctgcagctctgaaatccaactctctccatctcgatag 236
           |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 472 atggcaaatgactctgctctacactgcagctctgaaatccaactctctccatctcgatag 413

                                                                       
Query: 237 tagcttttccttcnaatcttctatgtccatccaacctgaagaaaggagtctgaaaatgga 296
           ||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 412 tagctttgcctcctaatcttctatgtccatccaacctgaataaaggagtctgaaaatgga 353

                                                                       
Query: 297 cccgcatcatctctgccatggtcacagccaagacctagtcatgcacccctactgatctgc 356
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct: 352 cccgcatcatctctgccatggtcacatccaagacctagtcatgtacccctactgagctgc 293

                                                   
Query: 357 aaaggccgggaaatggaatcctttacagggcaatttaaga 396
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaaggccgggaaatggaatcctttacagggcaatttaaga 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 800
Length adjustment: 9
Effective length of query: 387
Effective length of database: 791
Effective search space:   306117
Effective search space used:   306117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)